Hb_004881_040

Information

Type -
Description -
Location Contig4881: 37543-38618
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06160g
description hypothetical protein
nr
ID XP_011026338.1
description PREDICTED: protodermal factor 1-like [Populus euphratica]
swissprot
ID Q9S728
description Protodermal factor 1 OS=Arabidopsis thaliana GN=PDF1 PE=2 SV=1
trembl
ID U5GKR8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s06160g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45109: 37319-38914 , PASA_asmbl_45110: 37319-38331
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004881_040 0.0 - - PREDICTED: protodermal factor 1-like [Populus euphratica]
2 Hb_000190_200 0.0498533495 - - PREDICTED: uncharacterized protein LOC105649946 [Jatropha curcas]
3 Hb_000544_150 0.0597464258 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
4 Hb_162008_020 0.0599794194 - - PREDICTED: flavonoid 3'-monooxygenase [Jatropha curcas]
5 Hb_000329_220 0.0649690914 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
6 Hb_007157_050 0.0658833272 - - hypothetical protein RCOM_0711500 [Ricinus communis]
7 Hb_008252_010 0.0668045949 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
8 Hb_007741_010 0.0677431477 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 1 [Jatropha curcas]
9 Hb_001680_060 0.0697257001 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005550_060 0.0716853318 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
11 Hb_002376_020 0.0799965726 - - lectin, partial [Lathyrus palustris]
12 Hb_008642_020 0.0802735509 - - sterol desaturase, putative [Ricinus communis]
13 Hb_007558_060 0.0836292623 - - PREDICTED: uncharacterized protein LOC105644482 [Jatropha curcas]
14 Hb_000152_200 0.0842294888 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase ERL2 isoform X1 [Jatropha curcas]
15 Hb_121680_010 0.0843120672 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
16 Hb_005170_050 0.0852568661 - - PREDICTED: double-stranded RNA-binding protein 2-like [Populus euphratica]
17 Hb_001519_080 0.0880198319 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
18 Hb_003398_110 0.0889234727 - - PREDICTED: uncharacterized protein LOC105647583 [Jatropha curcas]
19 Hb_162008_040 0.0892150624 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
20 Hb_000005_160 0.0919949203 - - tonoplast intrinsic protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004881_040 Hb_004881_040 Hb_000190_200 Hb_000190_200 Hb_004881_040--Hb_000190_200 Hb_000544_150 Hb_000544_150 Hb_004881_040--Hb_000544_150 Hb_162008_020 Hb_162008_020 Hb_004881_040--Hb_162008_020 Hb_000329_220 Hb_000329_220 Hb_004881_040--Hb_000329_220 Hb_007157_050 Hb_007157_050 Hb_004881_040--Hb_007157_050 Hb_008252_010 Hb_008252_010 Hb_004881_040--Hb_008252_010 Hb_000190_200--Hb_000329_220 Hb_007741_010 Hb_007741_010 Hb_000190_200--Hb_007741_010 Hb_000190_200--Hb_162008_020 Hb_000190_200--Hb_000544_150 Hb_000190_200--Hb_008252_010 Hb_005550_060 Hb_005550_060 Hb_000544_150--Hb_005550_060 Hb_000544_150--Hb_007741_010 Hb_000005_390 Hb_000005_390 Hb_000544_150--Hb_000005_390 Hb_000005_160 Hb_000005_160 Hb_000544_150--Hb_000005_160 Hb_008642_020 Hb_008642_020 Hb_000544_150--Hb_008642_020 Hb_002376_020 Hb_002376_020 Hb_000544_150--Hb_002376_020 Hb_162008_020--Hb_008252_010 Hb_121680_010 Hb_121680_010 Hb_162008_020--Hb_121680_010 Hb_162008_040 Hb_162008_040 Hb_162008_020--Hb_162008_040 Hb_003398_110 Hb_003398_110 Hb_162008_020--Hb_003398_110 Hb_162008_020--Hb_002376_020 Hb_000329_220--Hb_007741_010 Hb_004090_010 Hb_004090_010 Hb_000329_220--Hb_004090_010 Hb_000329_220--Hb_000544_150 Hb_000329_220--Hb_162008_020 Hb_007157_050--Hb_121680_010 Hb_001680_060 Hb_001680_060 Hb_007157_050--Hb_001680_060 Hb_007157_050--Hb_162008_020 Hb_007157_050--Hb_162008_040 Hb_005854_060 Hb_005854_060 Hb_007157_050--Hb_005854_060 Hb_008252_010--Hb_002376_020 Hb_008252_010--Hb_121680_010 Hb_008252_010--Hb_162008_040 Hb_008252_010--Hb_005550_060 Hb_000212_170 Hb_000212_170 Hb_008252_010--Hb_000212_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.162634 72.886 3.76094 0 0.0659256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0449468 0 0.0724813 1.91683

CAGE analysis