Hb_004881_060

Information

Type transcription factor
Description TF Family: WRKY
Location Contig4881: 62939-65167
Sequence    

Annotation

kegg
ID pop:POPTR_0005s22480g
description POPTRDRAFT_559484; hypothetical protein
nr
ID XP_002306743.1
description hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
swissprot
ID Q93WV4
description Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1
trembl
ID B9H823
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22480g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45114: 62843-63074
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004881_060 0.0 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
2 Hb_003090_180 0.0712524234 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
3 Hb_001104_210 0.0857294634 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
4 Hb_003900_050 0.0967121991 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
5 Hb_000205_210 0.0992436958 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
6 Hb_056101_010 0.1030232436 - - hypothetical protein POPTR_0391s00200g [Populus trichocarpa]
7 Hb_001105_200 0.104126727 - - catalytic, putative [Ricinus communis]
8 Hb_001136_030 0.1062121188 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Jatropha curcas]
9 Hb_025526_010 0.1094183068 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104452086 [Eucalyptus grandis]
10 Hb_000487_240 0.1115491153 - - PREDICTED: CYSTM1 family protein B [Cucumis melo]
11 Hb_004712_020 0.1117608028 - - hypothetical protein JCGZ_00782 [Jatropha curcas]
12 Hb_004200_040 0.1154504658 - - laccase, putative [Ricinus communis]
13 Hb_008692_020 0.1164429288 - - -
14 Hb_000984_080 0.1165319021 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
15 Hb_002870_010 0.1167553068 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
16 Hb_008768_010 0.1176630954 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
17 Hb_012807_140 0.1190603657 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
18 Hb_000422_020 0.1203440679 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
19 Hb_014037_010 0.1273131535 - - PREDICTED: uncharacterized protein LOC105641871 [Jatropha curcas]
20 Hb_001377_010 0.1274585713 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]

Gene co-expression network

sample Hb_004881_060 Hb_004881_060 Hb_003090_180 Hb_003090_180 Hb_004881_060--Hb_003090_180 Hb_001104_210 Hb_001104_210 Hb_004881_060--Hb_001104_210 Hb_003900_050 Hb_003900_050 Hb_004881_060--Hb_003900_050 Hb_000205_210 Hb_000205_210 Hb_004881_060--Hb_000205_210 Hb_056101_010 Hb_056101_010 Hb_004881_060--Hb_056101_010 Hb_001105_200 Hb_001105_200 Hb_004881_060--Hb_001105_200 Hb_003090_180--Hb_001104_210 Hb_000487_240 Hb_000487_240 Hb_003090_180--Hb_000487_240 Hb_000025_740 Hb_000025_740 Hb_003090_180--Hb_000025_740 Hb_001136_030 Hb_001136_030 Hb_003090_180--Hb_001136_030 Hb_002870_010 Hb_002870_010 Hb_003090_180--Hb_002870_010 Hb_001104_210--Hb_001136_030 Hb_001377_010 Hb_001377_010 Hb_001104_210--Hb_001377_010 Hb_001104_210--Hb_000025_740 Hb_001104_210--Hb_002870_010 Hb_004200_040 Hb_004200_040 Hb_003900_050--Hb_004200_040 Hb_004463_040 Hb_004463_040 Hb_003900_050--Hb_004463_040 Hb_003900_050--Hb_000205_210 Hb_000140_260 Hb_000140_260 Hb_003900_050--Hb_000140_260 Hb_000684_020 Hb_000684_020 Hb_003900_050--Hb_000684_020 Hb_000205_210--Hb_004200_040 Hb_000205_210--Hb_000140_260 Hb_027141_010 Hb_027141_010 Hb_000205_210--Hb_027141_010 Hb_000205_210--Hb_001105_200 Hb_000984_080 Hb_000984_080 Hb_000205_210--Hb_000984_080 Hb_025526_010 Hb_025526_010 Hb_056101_010--Hb_025526_010 Hb_000575_110 Hb_000575_110 Hb_056101_010--Hb_000575_110 Hb_000422_020 Hb_000422_020 Hb_056101_010--Hb_000422_020 Hb_005116_010 Hb_005116_010 Hb_056101_010--Hb_005116_010 Hb_009486_100 Hb_009486_100 Hb_056101_010--Hb_009486_100 Hb_004712_020 Hb_004712_020 Hb_001105_200--Hb_004712_020 Hb_012807_140 Hb_012807_140 Hb_001105_200--Hb_012807_140 Hb_009642_010 Hb_009642_010 Hb_001105_200--Hb_009642_010 Hb_002122_040 Hb_002122_040 Hb_001105_200--Hb_002122_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0317954 4.23773 0.939498 3.32269 0.0148918 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.108802 0.0855907 0 20.2301 2.84826

CAGE analysis