Hb_004881_070

Information

Type -
Description -
Location Contig4881: 74993-78973
Sequence    

Annotation

kegg
ID rcu:RCOM_0696690
description ATP binding protein, putative (EC:2.7.11.25)
nr
ID XP_002526652.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9SJG2
description Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=3 SV=1
trembl
ID B9SKY3
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0696690 PE=3 SV=1
Gene Ontology
ID GO:0005622
description probable receptor-like protein kinase at2g42960

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45117: 75164-76214
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004881_070 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_162174_010 0.1032073776 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
3 Hb_000621_030 0.1057779554 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
4 Hb_004374_160 0.1203644391 transcription factor TF Family: bHLH hypothetical protein JCGZ_20587 [Jatropha curcas]
5 Hb_001541_130 0.1237499679 - - GDSL esterase/lipase [Morus notabilis]
6 Hb_001516_010 0.1261360424 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
7 Hb_000816_240 0.126658997 - - PREDICTED: phosphoglucan phosphatase LSF2, chloroplastic [Jatropha curcas]
8 Hb_000347_100 0.1270206229 transcription factor TF Family: C3H hypothetical protein RCOM_0684740 [Ricinus communis]
9 Hb_005018_010 0.1285866306 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
10 Hb_009767_060 0.1327106631 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
11 Hb_000951_150 0.1355686331 - - hypothetical protein POPTR_0015s05850g [Populus trichocarpa]
12 Hb_002001_030 0.1360935324 - - Plasma membrane ATPase 4 [Gossypium arboreum]
13 Hb_000977_020 0.1378372562 - - beta-hexosaminidase, putative [Ricinus communis]
14 Hb_003938_230 0.1388933329 - - Potassium transporter, putative [Ricinus communis]
15 Hb_032572_010 0.1415355127 - - PREDICTED: phospholipase A2-alpha [Jatropha curcas]
16 Hb_001488_350 0.1418185994 - - conserved hypothetical protein [Ricinus communis]
17 Hb_111985_100 0.1419814097 - - beta-galactosidase, putative [Ricinus communis]
18 Hb_000941_110 0.1425677081 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
19 Hb_002724_010 0.1428277402 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Citrus sinensis]
20 Hb_000922_200 0.1436461873 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]

Gene co-expression network

sample Hb_004881_070 Hb_004881_070 Hb_162174_010 Hb_162174_010 Hb_004881_070--Hb_162174_010 Hb_000621_030 Hb_000621_030 Hb_004881_070--Hb_000621_030 Hb_004374_160 Hb_004374_160 Hb_004881_070--Hb_004374_160 Hb_001541_130 Hb_001541_130 Hb_004881_070--Hb_001541_130 Hb_001516_010 Hb_001516_010 Hb_004881_070--Hb_001516_010 Hb_000816_240 Hb_000816_240 Hb_004881_070--Hb_000816_240 Hb_017043_040 Hb_017043_040 Hb_162174_010--Hb_017043_040 Hb_012655_010 Hb_012655_010 Hb_162174_010--Hb_012655_010 Hb_005731_010 Hb_005731_010 Hb_162174_010--Hb_005731_010 Hb_162174_010--Hb_000621_030 Hb_005018_010 Hb_005018_010 Hb_162174_010--Hb_005018_010 Hb_002001_030 Hb_002001_030 Hb_000621_030--Hb_002001_030 Hb_010264_010 Hb_010264_010 Hb_000621_030--Hb_010264_010 Hb_000621_030--Hb_004374_160 Hb_004116_050 Hb_004116_050 Hb_000621_030--Hb_004116_050 Hb_001488_350 Hb_001488_350 Hb_004374_160--Hb_001488_350 Hb_039435_010 Hb_039435_010 Hb_004374_160--Hb_039435_010 Hb_002817_050 Hb_002817_050 Hb_004374_160--Hb_002817_050 Hb_005493_010 Hb_005493_010 Hb_004374_160--Hb_005493_010 Hb_001095_020 Hb_001095_020 Hb_001541_130--Hb_001095_020 Hb_002572_040 Hb_002572_040 Hb_001541_130--Hb_002572_040 Hb_111985_100 Hb_111985_100 Hb_001541_130--Hb_111985_100 Hb_002150_090 Hb_002150_090 Hb_001541_130--Hb_002150_090 Hb_007811_020 Hb_007811_020 Hb_001541_130--Hb_007811_020 Hb_004435_020 Hb_004435_020 Hb_001541_130--Hb_004435_020 Hb_001079_060 Hb_001079_060 Hb_001516_010--Hb_001079_060 Hb_051663_010 Hb_051663_010 Hb_001516_010--Hb_051663_010 Hb_001516_010--Hb_111985_100 Hb_002835_310 Hb_002835_310 Hb_001516_010--Hb_002835_310 Hb_003938_230 Hb_003938_230 Hb_001516_010--Hb_003938_230 Hb_001514_030 Hb_001514_030 Hb_001516_010--Hb_001514_030 Hb_137222_010 Hb_137222_010 Hb_000816_240--Hb_137222_010 Hb_005725_240 Hb_005725_240 Hb_000816_240--Hb_005725_240 Hb_004096_210 Hb_004096_210 Hb_000816_240--Hb_004096_210 Hb_000976_400 Hb_000976_400 Hb_000816_240--Hb_000976_400 Hb_069696_020 Hb_069696_020 Hb_000816_240--Hb_069696_020 Hb_006075_030 Hb_006075_030 Hb_000816_240--Hb_006075_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0638829 1.07818 1.25766 0.00928097 0.00953331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0709118 0 0.310326 1.19895

CAGE analysis