Hb_004881_090

Information

Type -
Description -
Location Contig4881: 92097-93524
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06050g
description POPTRDRAFT_411355; hypothetical protein
nr
ID XP_002300880.2
description hypothetical protein POPTR_0002s06050g [Populus trichocarpa]
swissprot
ID Q9M2K6
description PLASMODESMATA CALLOSE-BINDING PROTEIN 5 OS=Arabidopsis thaliana GN=PDCB5 PE=1 SV=2
trembl
ID B9GT34
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s06050g PE=4 SV=2
Gene Ontology
ID GO:0004673
description glucan endo- -beta-glucosidase 12-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004881_090 0.0 - - hypothetical protein POPTR_0002s06050g [Populus trichocarpa]
2 Hb_000834_120 0.0024810994 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
3 Hb_000373_090 0.0038664996 - - PREDICTED: abscisic acid 8'-hydroxylase 3-like [Prunus mume]
4 Hb_003486_040 0.0042066088 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
5 Hb_006111_050 0.0042734647 transcription factor TF Family: AP2 Protein AINTEGUMENTA, putative [Ricinus communis]
6 Hb_000049_320 0.0051519263 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
7 Hb_000172_040 0.0063543228 - - Tetratricopeptide repeat protein, putative [Ricinus communis]
8 Hb_126871_010 0.0067800438 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
9 Hb_009615_140 0.0070939914 - - PREDICTED: alpha-galactosidase-like isoform X2 [Pyrus x bretschneideri]
10 Hb_039046_010 0.008740395 - - PREDICTED: uncharacterized protein LOC105644040 isoform X2 [Jatropha curcas]
11 Hb_008686_050 0.0099594559 - - -
12 Hb_004324_180 0.0139586031 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_008895_010 0.0153009328 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003914_040 0.0220557543 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
15 Hb_007040_020 0.0220633097 - - -
16 Hb_000295_150 0.0228646272 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
17 Hb_176760_010 0.0236572361 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
18 Hb_000125_050 0.0273837187 - - -
19 Hb_000494_140 0.0289414118 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
20 Hb_007058_020 0.0308804973 - - -

Gene co-expression network

sample Hb_004881_090 Hb_004881_090 Hb_000834_120 Hb_000834_120 Hb_004881_090--Hb_000834_120 Hb_000373_090 Hb_000373_090 Hb_004881_090--Hb_000373_090 Hb_003486_040 Hb_003486_040 Hb_004881_090--Hb_003486_040 Hb_006111_050 Hb_006111_050 Hb_004881_090--Hb_006111_050 Hb_000049_320 Hb_000049_320 Hb_004881_090--Hb_000049_320 Hb_000172_040 Hb_000172_040 Hb_004881_090--Hb_000172_040 Hb_000834_120--Hb_000373_090 Hb_000834_120--Hb_003486_040 Hb_000834_120--Hb_000049_320 Hb_000834_120--Hb_006111_050 Hb_008686_050 Hb_008686_050 Hb_000834_120--Hb_008686_050 Hb_000373_090--Hb_003486_040 Hb_000373_090--Hb_000049_320 Hb_000373_090--Hb_008686_050 Hb_000373_090--Hb_006111_050 Hb_003486_040--Hb_000049_320 Hb_003486_040--Hb_008686_050 Hb_003486_040--Hb_006111_050 Hb_006111_050--Hb_000172_040 Hb_126871_010 Hb_126871_010 Hb_006111_050--Hb_126871_010 Hb_009615_140 Hb_009615_140 Hb_006111_050--Hb_009615_140 Hb_039046_010 Hb_039046_010 Hb_006111_050--Hb_039046_010 Hb_000049_320--Hb_008686_050 Hb_000049_320--Hb_006111_050 Hb_000172_040--Hb_126871_010 Hb_000172_040--Hb_009615_140 Hb_000172_040--Hb_039046_010 Hb_004324_180 Hb_004324_180 Hb_000172_040--Hb_004324_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.807101 2.51767 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis