Hb_004883_020

Information

Type -
Description -
Location Contig4883: 15927-23922
Sequence    

Annotation

kegg
ID rcu:RCOM_1437240
description hypothetical protein
nr
ID XP_012088786.1
description PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
swissprot
ID F4KBP5
description Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana GN=CHR4 PE=2 SV=1
trembl
ID A0A067JUU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23142 PE=4 SV=1
Gene Ontology
ID GO:0005488
description chromatin remodeling complex subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45125: 18211-21540
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004883_020 0.0 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
2 Hb_007575_030 0.0813919649 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
3 Hb_001754_050 0.0973317976 - - protein arginine n-methyltransferase, putative [Ricinus communis]
4 Hb_000309_030 0.0980974982 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
5 Hb_003226_090 0.1035490681 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
6 Hb_004297_090 0.1054894827 - - PREDICTED: DNA polymerase epsilon catalytic subunit A [Jatropha curcas]
7 Hb_000098_180 0.1092364683 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
8 Hb_000220_110 0.1139879812 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
9 Hb_000261_310 0.1144343643 - - PREDICTED: UV radiation resistance-associated gene protein isoform X3 [Jatropha curcas]
10 Hb_000116_240 0.116341635 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
11 Hb_001277_400 0.1167719295 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
12 Hb_124315_010 0.1192080247 - - PREDICTED: uncharacterized protein LOC105650413 [Jatropha curcas]
13 Hb_004218_130 0.1207656368 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
14 Hb_000590_070 0.1208484939 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
15 Hb_000318_170 0.1210944298 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
16 Hb_000042_380 0.1219471574 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
17 Hb_172706_020 0.1223851373 - - PREDICTED: protein ABIL2 [Jatropha curcas]
18 Hb_009296_020 0.1237304768 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
19 Hb_143766_080 0.1248555092 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
20 Hb_000256_160 0.1258874554 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]

Gene co-expression network

sample Hb_004883_020 Hb_004883_020 Hb_007575_030 Hb_007575_030 Hb_004883_020--Hb_007575_030 Hb_001754_050 Hb_001754_050 Hb_004883_020--Hb_001754_050 Hb_000309_030 Hb_000309_030 Hb_004883_020--Hb_000309_030 Hb_003226_090 Hb_003226_090 Hb_004883_020--Hb_003226_090 Hb_004297_090 Hb_004297_090 Hb_004883_020--Hb_004297_090 Hb_000098_180 Hb_000098_180 Hb_004883_020--Hb_000098_180 Hb_000261_310 Hb_000261_310 Hb_007575_030--Hb_000261_310 Hb_000165_070 Hb_000165_070 Hb_007575_030--Hb_000165_070 Hb_000116_240 Hb_000116_240 Hb_007575_030--Hb_000116_240 Hb_000318_170 Hb_000318_170 Hb_007575_030--Hb_000318_170 Hb_000042_380 Hb_000042_380 Hb_007575_030--Hb_000042_380 Hb_143766_080 Hb_143766_080 Hb_001754_050--Hb_143766_080 Hb_004129_010 Hb_004129_010 Hb_001754_050--Hb_004129_010 Hb_000392_250 Hb_000392_250 Hb_001754_050--Hb_000392_250 Hb_000057_130 Hb_000057_130 Hb_001754_050--Hb_000057_130 Hb_004218_130 Hb_004218_130 Hb_001754_050--Hb_004218_130 Hb_000309_030--Hb_000116_240 Hb_000309_030--Hb_000261_310 Hb_000309_030--Hb_000318_170 Hb_010050_020 Hb_010050_020 Hb_000309_030--Hb_010050_020 Hb_000590_070 Hb_000590_070 Hb_000309_030--Hb_000590_070 Hb_000256_160 Hb_000256_160 Hb_003226_090--Hb_000256_160 Hb_013968_010 Hb_013968_010 Hb_003226_090--Hb_013968_010 Hb_000007_410 Hb_000007_410 Hb_003226_090--Hb_000007_410 Hb_002010_090 Hb_002010_090 Hb_003226_090--Hb_002010_090 Hb_000230_530 Hb_000230_530 Hb_003226_090--Hb_000230_530 Hb_001677_100 Hb_001677_100 Hb_004297_090--Hb_001677_100 Hb_000365_200 Hb_000365_200 Hb_004297_090--Hb_000365_200 Hb_003683_130 Hb_003683_130 Hb_004297_090--Hb_003683_130 Hb_000260_400 Hb_000260_400 Hb_004297_090--Hb_000260_400 Hb_009296_020 Hb_009296_020 Hb_004297_090--Hb_009296_020 Hb_000098_180--Hb_004218_130 Hb_000589_170 Hb_000589_170 Hb_000098_180--Hb_000589_170 Hb_001117_080 Hb_001117_080 Hb_000098_180--Hb_001117_080 Hb_000098_180--Hb_009296_020 Hb_002259_220 Hb_002259_220 Hb_000098_180--Hb_002259_220 Hb_011188_010 Hb_011188_010 Hb_000098_180--Hb_011188_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.544862 2.05536 4.12312 3.72867 0.344219 0.339123
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.544088 0.509721 0.605556 4.21072 2.59313

CAGE analysis