Hb_004883_050

Information

Type -
Description -
Location Contig4883: 43801-47127
Sequence    

Annotation

kegg
ID cam:101501777
description probable UDP-arabinopyranose mutase 5-like
nr
ID XP_010649270.1
description PREDICTED: probable UDP-arabinopyranose mutase 5 isoform X2 [Vitis vinifera]
swissprot
ID Q9FFD2
description Probable UDP-arabinopyranose mutase 5 OS=Arabidopsis thaliana GN=RGP5 PE=1 SV=1
trembl
ID A5AWB9
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031831 PE=4 SV=1
Gene Ontology
ID GO:0003824
description probable udp-arabinopyranose mutase 5 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45128: 43550-47195 , PASA_asmbl_45129: 45099-45995
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004883_050 0.0 - - PREDICTED: probable UDP-arabinopyranose mutase 5 isoform X2 [Vitis vinifera]
2 Hb_012760_130 0.0926983936 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
3 Hb_007123_060 0.1147541759 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
4 Hb_001829_040 0.1267270841 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
5 Hb_001911_040 0.1296539708 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
6 Hb_133724_010 0.1411339327 - - conserved hypothetical protein [Ricinus communis]
7 Hb_059480_010 0.1418219163 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
8 Hb_003038_220 0.1494699959 - - eukaryotic translation initiation factor 2 gamma subunit, putative [Ricinus communis]
9 Hb_022181_030 0.1495905668 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
10 Hb_003992_040 0.1526347041 - - Post-illumination chlorophyll fluorescence increase isoform 5 [Theobroma cacao]
11 Hb_000363_330 0.15335404 - - -
12 Hb_000022_050 0.1536691906 - - PREDICTED: retinol dehydrogenase 11-like isoform X2 [Glycine max]
13 Hb_150023_010 0.1586471979 - - 50S ribosomal protein L2, putative [Ricinus communis]
14 Hb_085972_010 0.1590462325 transcription factor TF Family: NAC NAC transcription factor 066 [Jatropha curcas]
15 Hb_001545_050 0.1609128002 - - PREDICTED: ras-related protein Rab7 [Nicotiana sylvestris]
16 Hb_000327_290 0.1613734899 - - Histone H4 [Triticum urartu]
17 Hb_003925_070 0.161634262 - - ATOZI1, putative [Ricinus communis]
18 Hb_000416_070 0.1616346825 - - hypothetical protein JCGZ_21620 [Jatropha curcas]
19 Hb_002687_080 0.1635291306 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
20 Hb_000003_540 0.1658879161 - - PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]

Gene co-expression network

sample Hb_004883_050 Hb_004883_050 Hb_012760_130 Hb_012760_130 Hb_004883_050--Hb_012760_130 Hb_007123_060 Hb_007123_060 Hb_004883_050--Hb_007123_060 Hb_001829_040 Hb_001829_040 Hb_004883_050--Hb_001829_040 Hb_001911_040 Hb_001911_040 Hb_004883_050--Hb_001911_040 Hb_133724_010 Hb_133724_010 Hb_004883_050--Hb_133724_010 Hb_059480_010 Hb_059480_010 Hb_004883_050--Hb_059480_010 Hb_000416_070 Hb_000416_070 Hb_012760_130--Hb_000416_070 Hb_012760_130--Hb_007123_060 Hb_005731_120 Hb_005731_120 Hb_012760_130--Hb_005731_120 Hb_001287_080 Hb_001287_080 Hb_012760_130--Hb_001287_080 Hb_003498_090 Hb_003498_090 Hb_012760_130--Hb_003498_090 Hb_001545_050 Hb_001545_050 Hb_007123_060--Hb_001545_050 Hb_000327_290 Hb_000327_290 Hb_007123_060--Hb_000327_290 Hb_184570_010 Hb_184570_010 Hb_007123_060--Hb_184570_010 Hb_012120_030 Hb_012120_030 Hb_007123_060--Hb_012120_030 Hb_011671_480 Hb_011671_480 Hb_001829_040--Hb_011671_480 Hb_000022_050 Hb_000022_050 Hb_001829_040--Hb_000022_050 Hb_002983_080 Hb_002983_080 Hb_001829_040--Hb_002983_080 Hb_000260_720 Hb_000260_720 Hb_001829_040--Hb_000260_720 Hb_005686_120 Hb_005686_120 Hb_001829_040--Hb_005686_120 Hb_000261_230 Hb_000261_230 Hb_001829_040--Hb_000261_230 Hb_001911_040--Hb_011671_480 Hb_009545_090 Hb_009545_090 Hb_001911_040--Hb_009545_090 Hb_000538_240 Hb_000538_240 Hb_001911_040--Hb_000538_240 Hb_000743_030 Hb_000743_030 Hb_001911_040--Hb_000743_030 Hb_001911_040--Hb_001829_040 Hb_000357_110 Hb_000357_110 Hb_001911_040--Hb_000357_110 Hb_002192_090 Hb_002192_090 Hb_133724_010--Hb_002192_090 Hb_002388_010 Hb_002388_010 Hb_133724_010--Hb_002388_010 Hb_099878_050 Hb_099878_050 Hb_133724_010--Hb_099878_050 Hb_133724_010--Hb_001829_040 Hb_130613_010 Hb_130613_010 Hb_133724_010--Hb_130613_010 Hb_001518_070 Hb_001518_070 Hb_133724_010--Hb_001518_070 Hb_084247_010 Hb_084247_010 Hb_059480_010--Hb_084247_010 Hb_000522_150 Hb_000522_150 Hb_059480_010--Hb_000522_150 Hb_002445_060 Hb_002445_060 Hb_059480_010--Hb_002445_060 Hb_003929_170 Hb_003929_170 Hb_059480_010--Hb_003929_170 Hb_000107_230 Hb_000107_230 Hb_059480_010--Hb_000107_230 Hb_004052_040 Hb_004052_040 Hb_059480_010--Hb_004052_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.33843 4.89185 4.79628 10.165 2.40231 9.11367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.58288 5.43761 1.23076 1.48083 1.89128

CAGE analysis