Hb_004884_010

Information

Type -
Description -
Location Contig4884: 8930-18273
Sequence    

Annotation

kegg
ID mdm:103447131
description pre-mRNA-splicing factor CWC22 homolog
nr
ID XP_012089807.1
description PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Jatropha curcas]
swissprot
ID P0CM96
description Pre-mRNA-splicing factor CWC22 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CWC22 PE=3 SV=1
trembl
ID A0A067JG13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00443 PE=4 SV=1
Gene Ontology
ID GO:0003723
description pre-mrna-splicing factor cwc22 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45131: 8867-9278 , PASA_asmbl_45132: 9285-18218
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004884_010 0.0 - - PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Jatropha curcas]
2 Hb_133047_010 0.0546383231 - - xanthine dehydrogenase, putative [Ricinus communis]
3 Hb_034243_020 0.0571789236 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
4 Hb_010315_090 0.0624133074 - - suppressor of ty, putative [Ricinus communis]
5 Hb_002022_070 0.0642885015 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
6 Hb_148909_030 0.0723481469 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
7 Hb_004543_030 0.0757506589 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
8 Hb_002392_030 0.0783313788 - - WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Theobroma cacao]
9 Hb_001493_040 0.0793506272 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
10 Hb_000012_140 0.0802230629 - - conserved hypothetical protein [Ricinus communis]
11 Hb_019153_020 0.0836621003 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
12 Hb_111985_080 0.0843152255 - - PREDICTED: pentatricopeptide repeat-containing protein At1g19720 [Jatropha curcas]
13 Hb_006787_060 0.0883105905 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
14 Hb_000406_020 0.089135491 - - -
15 Hb_000032_010 0.0893867085 - - crooked neck protein, putative [Ricinus communis]
16 Hb_002301_080 0.0902205692 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
17 Hb_000345_150 0.0903336825 - - PREDICTED: uncharacterized protein LOC105647517 isoform X1 [Jatropha curcas]
18 Hb_000320_380 0.0903521489 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
19 Hb_140049_020 0.092269958 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
20 Hb_007576_120 0.0923888464 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]

Gene co-expression network

sample Hb_004884_010 Hb_004884_010 Hb_133047_010 Hb_133047_010 Hb_004884_010--Hb_133047_010 Hb_034243_020 Hb_034243_020 Hb_004884_010--Hb_034243_020 Hb_010315_090 Hb_010315_090 Hb_004884_010--Hb_010315_090 Hb_002022_070 Hb_002022_070 Hb_004884_010--Hb_002022_070 Hb_148909_030 Hb_148909_030 Hb_004884_010--Hb_148909_030 Hb_004543_030 Hb_004543_030 Hb_004884_010--Hb_004543_030 Hb_111985_080 Hb_111985_080 Hb_133047_010--Hb_111985_080 Hb_002392_030 Hb_002392_030 Hb_133047_010--Hb_002392_030 Hb_133047_010--Hb_034243_020 Hb_002301_080 Hb_002301_080 Hb_133047_010--Hb_002301_080 Hb_133047_010--Hb_148909_030 Hb_034243_020--Hb_004543_030 Hb_001493_040 Hb_001493_040 Hb_034243_020--Hb_001493_040 Hb_007576_120 Hb_007576_120 Hb_034243_020--Hb_007576_120 Hb_034243_020--Hb_010315_090 Hb_000329_130 Hb_000329_130 Hb_010315_090--Hb_000329_130 Hb_001417_050 Hb_001417_050 Hb_010315_090--Hb_001417_050 Hb_010315_090--Hb_001493_040 Hb_019153_020 Hb_019153_020 Hb_010315_090--Hb_019153_020 Hb_140049_020 Hb_140049_020 Hb_010315_090--Hb_140049_020 Hb_000960_100 Hb_000960_100 Hb_002022_070--Hb_000960_100 Hb_000025_320 Hb_000025_320 Hb_002022_070--Hb_000025_320 Hb_001021_200 Hb_001021_200 Hb_002022_070--Hb_001021_200 Hb_004108_100 Hb_004108_100 Hb_002022_070--Hb_004108_100 Hb_000028_510 Hb_000028_510 Hb_002022_070--Hb_000028_510 Hb_005488_150 Hb_005488_150 Hb_148909_030--Hb_005488_150 Hb_116929_010 Hb_116929_010 Hb_148909_030--Hb_116929_010 Hb_148909_030--Hb_111985_080 Hb_148909_030--Hb_002392_030 Hb_000010_360 Hb_000010_360 Hb_148909_030--Hb_000010_360 Hb_004543_030--Hb_007576_120 Hb_002524_040 Hb_002524_040 Hb_004543_030--Hb_002524_040 Hb_004718_010 Hb_004718_010 Hb_004543_030--Hb_004718_010 Hb_000997_030 Hb_000997_030 Hb_004543_030--Hb_000997_030 Hb_004543_030--Hb_010315_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.1533 34.3085 16.3006 8.41055 37.7756 34.8993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1999 6.7167 16.94 20.7903 23.3386

CAGE analysis