Hb_004884_030

Information

Type -
Description -
Location Contig4884: 22657-33958
Sequence    

Annotation

kegg
ID vvi:100248822
description ammonium transporter 3 member 3
nr
ID XP_002271004.1
description PREDICTED: ammonium transporter 3 member 3 [Vitis vinifera]
swissprot
ID Q84KJ6
description Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1
trembl
ID A0A0E0JQK7
description Uncharacterized protein OS=Oryza punctata PE=4 SV=1
Gene Ontology
ID GO:0016021
description ammonium transporter 3 member 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004884_030 0.0 - - PREDICTED: ammonium transporter 3 member 3 [Vitis vinifera]
2 Hb_027380_230 0.1193717183 - - PREDICTED: CSC1-like protein ERD4 [Jatropha curcas]
3 Hb_000482_150 0.1297696337 - - PREDICTED: zinc transporter 4, chloroplastic [Jatropha curcas]
4 Hb_167973_010 0.1386062789 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
5 Hb_004701_050 0.1461313322 - - alpha1 family protein [Populus trichocarpa]
6 Hb_006355_020 0.1477478072 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
7 Hb_000376_060 0.148211976 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
8 Hb_000347_560 0.1483831265 - - -
9 Hb_002814_060 0.1496774024 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
10 Hb_003376_260 0.1510776439 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
11 Hb_116420_040 0.1518298897 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004884_020 0.1521273973 - - PREDICTED: BAG family molecular chaperone regulator 4 isoform X2 [Jatropha curcas]
13 Hb_001194_020 0.1557764765 - - microtubule associated protein xmap215, putative [Ricinus communis]
14 Hb_162275_040 0.1577784777 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001117_160 0.1580728628 - - PREDICTED: pentatricopeptide repeat-containing protein At1g10270 [Jatropha curcas]
16 Hb_012528_020 0.1587410694 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Jatropha curcas]
17 Hb_001401_060 0.1588932862 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
18 Hb_001031_040 0.1592053977 - - conserved hypothetical protein [Ricinus communis]
19 Hb_009486_080 0.1610459591 - - PREDICTED: uncharacterized protein LOC105643242 [Jatropha curcas]
20 Hb_022250_100 0.1616788994 - - calnexin, putative [Ricinus communis]

Gene co-expression network

sample Hb_004884_030 Hb_004884_030 Hb_027380_230 Hb_027380_230 Hb_004884_030--Hb_027380_230 Hb_000482_150 Hb_000482_150 Hb_004884_030--Hb_000482_150 Hb_167973_010 Hb_167973_010 Hb_004884_030--Hb_167973_010 Hb_004701_050 Hb_004701_050 Hb_004884_030--Hb_004701_050 Hb_006355_020 Hb_006355_020 Hb_004884_030--Hb_006355_020 Hb_000376_060 Hb_000376_060 Hb_004884_030--Hb_000376_060 Hb_008147_050 Hb_008147_050 Hb_027380_230--Hb_008147_050 Hb_000206_120 Hb_000206_120 Hb_027380_230--Hb_000206_120 Hb_007257_010 Hb_007257_010 Hb_027380_230--Hb_007257_010 Hb_027380_230--Hb_000376_060 Hb_003376_260 Hb_003376_260 Hb_027380_230--Hb_003376_260 Hb_000482_150--Hb_006355_020 Hb_000183_050 Hb_000183_050 Hb_000482_150--Hb_000183_050 Hb_000284_230 Hb_000284_230 Hb_000482_150--Hb_000284_230 Hb_003417_010 Hb_003417_010 Hb_000482_150--Hb_003417_010 Hb_001210_050 Hb_001210_050 Hb_000482_150--Hb_001210_050 Hb_119600_050 Hb_119600_050 Hb_000482_150--Hb_119600_050 Hb_004875_010 Hb_004875_010 Hb_167973_010--Hb_004875_010 Hb_000964_170 Hb_000964_170 Hb_167973_010--Hb_000964_170 Hb_012353_040 Hb_012353_040 Hb_167973_010--Hb_012353_040 Hb_167973_010--Hb_119600_050 Hb_003632_030 Hb_003632_030 Hb_167973_010--Hb_003632_030 Hb_089140_050 Hb_089140_050 Hb_004701_050--Hb_089140_050 Hb_162275_040 Hb_162275_040 Hb_004701_050--Hb_162275_040 Hb_000261_100 Hb_000261_100 Hb_004701_050--Hb_000261_100 Hb_000780_190 Hb_000780_190 Hb_004701_050--Hb_000780_190 Hb_010272_010 Hb_010272_010 Hb_004701_050--Hb_010272_010 Hb_000035_410 Hb_000035_410 Hb_004701_050--Hb_000035_410 Hb_006355_020--Hb_000284_230 Hb_022250_100 Hb_022250_100 Hb_006355_020--Hb_022250_100 Hb_006355_020--Hb_162275_040 Hb_001194_020 Hb_001194_020 Hb_006355_020--Hb_001194_020 Hb_001059_130 Hb_001059_130 Hb_006355_020--Hb_001059_130 Hb_000086_440 Hb_000086_440 Hb_006355_020--Hb_000086_440 Hb_000086_150 Hb_000086_150 Hb_000376_060--Hb_000086_150 Hb_007305_020 Hb_007305_020 Hb_000376_060--Hb_007305_020 Hb_011344_020 Hb_011344_020 Hb_000376_060--Hb_011344_020 Hb_000376_060--Hb_004701_050 Hb_041327_020 Hb_041327_020 Hb_000376_060--Hb_041327_020 Hb_098209_010 Hb_098209_010 Hb_000376_060--Hb_098209_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.11238 2.04316 1.43064 2.14194 2.97144 2.57005
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.12434 0.293533 0.303807 1.15013 2.86693

CAGE analysis