Hb_004884_070

Information

Type -
Description -
Location Contig4884: 64624-75225
Sequence    

Annotation

kegg
ID tcc:TCM_021625
description Tetratricopeptide repeat (TPR)-containing protein isoform 1
nr
ID XP_012089798.1
description PREDICTED: ethylene-overproduction protein 1 [Jatropha curcas]
swissprot
ID O65020
description Ethylene-overproduction protein 1 OS=Arabidopsis thaliana GN=ETO1 PE=1 SV=2
trembl
ID A0A067JS70
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00437 PE=4 SV=1
Gene Ontology
ID GO:0030674
description ethylene-overproduction protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45141: 67114-75201
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004884_070 0.0 - - PREDICTED: ethylene-overproduction protein 1 [Jatropha curcas]
2 Hb_000690_160 0.0944234452 - - PREDICTED: uncharacterized protein LOC105121500 [Populus euphratica]
3 Hb_002374_240 0.0994786785 - - nucellin, putative [Ricinus communis]
4 Hb_001322_140 0.1001427987 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
5 Hb_001001_080 0.1008638261 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
6 Hb_000753_240 0.1045194947 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
7 Hb_000866_010 0.1059053143 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002997_080 0.1083354857 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
9 Hb_006452_170 0.1093203399 - - -
10 Hb_029142_060 0.1094914716 - - PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Jatropha curcas]
11 Hb_000768_170 0.1098162783 - - hypothetical protein JCGZ_02624 [Jatropha curcas]
12 Hb_002235_250 0.1107814962 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
13 Hb_030312_080 0.1113312784 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
14 Hb_000453_050 0.1117661146 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
15 Hb_073171_040 0.1128102072 - - malic enzyme, putative [Ricinus communis]
16 Hb_000056_040 0.1131918774 - - PREDICTED: protein IQ-DOMAIN 31 [Jatropha curcas]
17 Hb_000080_120 0.1133779724 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
18 Hb_000184_170 0.1134926199 - - hypothetical protein RCOM_1213430 [Ricinus communis]
19 Hb_001348_180 0.1135093406 - - PREDICTED: TLC domain-containing protein 2 [Jatropha curcas]
20 Hb_000804_040 0.1155083326 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_004884_070 Hb_004884_070 Hb_000690_160 Hb_000690_160 Hb_004884_070--Hb_000690_160 Hb_002374_240 Hb_002374_240 Hb_004884_070--Hb_002374_240 Hb_001322_140 Hb_001322_140 Hb_004884_070--Hb_001322_140 Hb_001001_080 Hb_001001_080 Hb_004884_070--Hb_001001_080 Hb_000753_240 Hb_000753_240 Hb_004884_070--Hb_000753_240 Hb_000866_010 Hb_000866_010 Hb_004884_070--Hb_000866_010 Hb_000690_160--Hb_000866_010 Hb_000690_160--Hb_000753_240 Hb_075751_010 Hb_075751_010 Hb_000690_160--Hb_075751_010 Hb_006817_010 Hb_006817_010 Hb_000690_160--Hb_006817_010 Hb_004440_020 Hb_004440_020 Hb_000690_160--Hb_004440_020 Hb_000768_170 Hb_000768_170 Hb_000690_160--Hb_000768_170 Hb_000200_030 Hb_000200_030 Hb_002374_240--Hb_000200_030 Hb_000184_170 Hb_000184_170 Hb_002374_240--Hb_000184_170 Hb_000224_160 Hb_000224_160 Hb_002374_240--Hb_000224_160 Hb_001584_200 Hb_001584_200 Hb_002374_240--Hb_001584_200 Hb_000181_240 Hb_000181_240 Hb_002374_240--Hb_000181_240 Hb_000295_080 Hb_000295_080 Hb_002374_240--Hb_000295_080 Hb_000804_040 Hb_000804_040 Hb_001322_140--Hb_000804_040 Hb_001700_010 Hb_001700_010 Hb_001322_140--Hb_001700_010 Hb_012022_150 Hb_012022_150 Hb_001322_140--Hb_012022_150 Hb_000205_190 Hb_000205_190 Hb_001322_140--Hb_000205_190 Hb_001322_140--Hb_000184_170 Hb_001322_140--Hb_000224_160 Hb_000599_180 Hb_000599_180 Hb_001001_080--Hb_000599_180 Hb_001001_080--Hb_000205_190 Hb_007657_010 Hb_007657_010 Hb_001001_080--Hb_007657_010 Hb_004097_070 Hb_004097_070 Hb_001001_080--Hb_004097_070 Hb_001789_190 Hb_001789_190 Hb_001001_080--Hb_001789_190 Hb_004970_190 Hb_004970_190 Hb_001001_080--Hb_004970_190 Hb_003029_070 Hb_003029_070 Hb_000753_240--Hb_003029_070 Hb_000753_240--Hb_004970_190 Hb_000753_240--Hb_000866_010 Hb_000866_260 Hb_000866_260 Hb_000753_240--Hb_000866_260 Hb_002013_020 Hb_002013_020 Hb_000753_240--Hb_002013_020 Hb_000753_240--Hb_000804_040 Hb_000866_010--Hb_006817_010 Hb_000053_110 Hb_000053_110 Hb_000866_010--Hb_000053_110 Hb_009421_020 Hb_009421_020 Hb_000866_010--Hb_009421_020 Hb_007389_010 Hb_007389_010 Hb_000866_010--Hb_007389_010 Hb_000260_100 Hb_000260_100 Hb_000866_010--Hb_000260_100 Hb_002235_250 Hb_002235_250 Hb_000866_010--Hb_002235_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3783 6.23756 15.3219 9.92076 16.5226 15.8463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2935 11.5715 17.1748 3.06788 15.7065

CAGE analysis