Hb_004884_090

Information

Type -
Description -
Location Contig4884: 78996-81818
Sequence    

Annotation

kegg
ID rcu:RCOM_0847440
description importin beta-1, putative
nr
ID XP_002526656.1
description importin beta-1, putative [Ricinus communis]
swissprot
ID Q9FJD4
description Importin subunit beta-1 OS=Arabidopsis thaliana GN=KPNB1 PE=1 SV=1
trembl
ID B9SKY7
description Importin beta-1, putative OS=Ricinus communis GN=RCOM_0847440 PE=4 SV=1
Gene Ontology
ID GO:0005622
description importin subunit beta-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45144: 77688-82083
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004884_090 0.0 - - importin beta-1, putative [Ricinus communis]
2 Hb_003124_270 0.0477622552 transcription factor TF Family: LUG hypothetical protein JCGZ_13223 [Jatropha curcas]
3 Hb_007012_040 0.0700018056 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
4 Hb_005181_050 0.0764771693 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
5 Hb_000809_250 0.0776879819 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
6 Hb_009476_120 0.0787850356 - - Clathrin heavy chain 1 [Glycine soja]
7 Hb_033799_010 0.0797669376 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
8 Hb_001511_180 0.0825263513 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]
9 Hb_000844_050 0.0834894175 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
10 Hb_008165_020 0.0879167418 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
11 Hb_003680_020 0.0885381331 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_002686_140 0.0894482947 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
13 Hb_000960_080 0.0913605651 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
14 Hb_002235_310 0.0969459732 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
15 Hb_002311_130 0.0985908276 - - PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]
16 Hb_000167_120 0.098869538 - - PREDICTED: U-box domain-containing protein 14 [Jatropha curcas]
17 Hb_002078_470 0.0992961229 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
18 Hb_000125_180 0.0998750128 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
19 Hb_048476_080 0.0999433068 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
20 Hb_171554_040 0.1017989928 - - PREDICTED: phytanoyl-CoA dioxygenase [Populus euphratica]

Gene co-expression network

sample Hb_004884_090 Hb_004884_090 Hb_003124_270 Hb_003124_270 Hb_004884_090--Hb_003124_270 Hb_007012_040 Hb_007012_040 Hb_004884_090--Hb_007012_040 Hb_005181_050 Hb_005181_050 Hb_004884_090--Hb_005181_050 Hb_000809_250 Hb_000809_250 Hb_004884_090--Hb_000809_250 Hb_009476_120 Hb_009476_120 Hb_004884_090--Hb_009476_120 Hb_033799_010 Hb_033799_010 Hb_004884_090--Hb_033799_010 Hb_000844_050 Hb_000844_050 Hb_003124_270--Hb_000844_050 Hb_003124_270--Hb_007012_040 Hb_003124_270--Hb_005181_050 Hb_003124_270--Hb_000809_250 Hb_003680_020 Hb_003680_020 Hb_003124_270--Hb_003680_020 Hb_171554_040 Hb_171554_040 Hb_007012_040--Hb_171554_040 Hb_000154_130 Hb_000154_130 Hb_007012_040--Hb_000154_130 Hb_004551_020 Hb_004551_020 Hb_007012_040--Hb_004551_020 Hb_000445_130 Hb_000445_130 Hb_007012_040--Hb_000445_130 Hb_000167_120 Hb_000167_120 Hb_005181_050--Hb_000167_120 Hb_005181_050--Hb_003680_020 Hb_000125_180 Hb_000125_180 Hb_005181_050--Hb_000125_180 Hb_005181_050--Hb_000844_050 Hb_005181_050--Hb_000809_250 Hb_000809_250--Hb_000844_050 Hb_000809_250--Hb_003680_020 Hb_001998_150 Hb_001998_150 Hb_000809_250--Hb_001998_150 Hb_003661_010 Hb_003661_010 Hb_000809_250--Hb_003661_010 Hb_001414_010 Hb_001414_010 Hb_009476_120--Hb_001414_010 Hb_008165_020 Hb_008165_020 Hb_009476_120--Hb_008165_020 Hb_001511_180 Hb_001511_180 Hb_009476_120--Hb_001511_180 Hb_160608_010 Hb_160608_010 Hb_009476_120--Hb_160608_010 Hb_009476_120--Hb_003124_270 Hb_021977_010 Hb_021977_010 Hb_009476_120--Hb_021977_010 Hb_000080_110 Hb_000080_110 Hb_033799_010--Hb_000080_110 Hb_033799_010--Hb_171554_040 Hb_033799_010--Hb_001511_180 Hb_000049_250 Hb_000049_250 Hb_033799_010--Hb_000049_250 Hb_007245_020 Hb_007245_020 Hb_033799_010--Hb_007245_020 Hb_005074_020 Hb_005074_020 Hb_033799_010--Hb_005074_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.6292 10.099 5.5295 8.34618 2.10703 4.12079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.13195 2.52955 3.70196 7.64266 9.67879

CAGE analysis