Hb_004884_160

Information

Type -
Description -
Location Contig4884: 119269-121409
Sequence    

Annotation

kegg
ID vvi:100247080
description uncharacterized LOC100247080
nr
ID XP_012089792.1
description PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00431 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45150: 119534-120265
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004884_160 0.0 - - PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]
2 Hb_000403_060 0.0937056136 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
3 Hb_055062_020 0.1068874382 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
4 Hb_148121_040 0.1126284728 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
5 Hb_007113_070 0.1127036253 - - protein with unknown function [Ricinus communis]
6 Hb_000175_340 0.1151869453 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
7 Hb_032264_110 0.1253200068 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
8 Hb_000317_390 0.1256733575 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
9 Hb_003849_130 0.1269424689 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
10 Hb_004696_080 0.1316274062 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
11 Hb_026889_030 0.131821246 - - protein with unknown function [Ricinus communis]
12 Hb_000638_250 0.1332475873 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_007044_120 0.1335966821 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
14 Hb_006671_010 0.1339288066 - - PREDICTED: 5' exonuclease Apollo isoform X1 [Jatropha curcas]
15 Hb_157022_010 0.1351089241 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
16 Hb_152784_010 0.1356695049 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]
17 Hb_003540_030 0.1391203616 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
18 Hb_000803_200 0.1409574128 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
19 Hb_005054_210 0.1412162782 - - hypothetical protein PRUPE_ppa026456mg [Prunus persica]
20 Hb_005695_120 0.1423284599 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004884_160 Hb_004884_160 Hb_000403_060 Hb_000403_060 Hb_004884_160--Hb_000403_060 Hb_055062_020 Hb_055062_020 Hb_004884_160--Hb_055062_020 Hb_148121_040 Hb_148121_040 Hb_004884_160--Hb_148121_040 Hb_007113_070 Hb_007113_070 Hb_004884_160--Hb_007113_070 Hb_000175_340 Hb_000175_340 Hb_004884_160--Hb_000175_340 Hb_032264_110 Hb_032264_110 Hb_004884_160--Hb_032264_110 Hb_000403_060--Hb_000175_340 Hb_157022_010 Hb_157022_010 Hb_000403_060--Hb_157022_010 Hb_000638_250 Hb_000638_250 Hb_000403_060--Hb_000638_250 Hb_007044_120 Hb_007044_120 Hb_000403_060--Hb_007044_120 Hb_000403_060--Hb_148121_040 Hb_000403_060--Hb_055062_020 Hb_000317_390 Hb_000317_390 Hb_055062_020--Hb_000317_390 Hb_003849_130 Hb_003849_130 Hb_055062_020--Hb_003849_130 Hb_001341_150 Hb_001341_150 Hb_055062_020--Hb_001341_150 Hb_000261_140 Hb_000261_140 Hb_055062_020--Hb_000261_140 Hb_026889_030 Hb_026889_030 Hb_055062_020--Hb_026889_030 Hb_000608_050 Hb_000608_050 Hb_148121_040--Hb_000608_050 Hb_148121_040--Hb_000638_250 Hb_004696_080 Hb_004696_080 Hb_148121_040--Hb_004696_080 Hb_152784_010 Hb_152784_010 Hb_148121_040--Hb_152784_010 Hb_005054_210 Hb_005054_210 Hb_148121_040--Hb_005054_210 Hb_154948_040 Hb_154948_040 Hb_007113_070--Hb_154948_040 Hb_000002_380 Hb_000002_380 Hb_007113_070--Hb_000002_380 Hb_003671_020 Hb_003671_020 Hb_007113_070--Hb_003671_020 Hb_007113_070--Hb_000403_060 Hb_005867_020 Hb_005867_020 Hb_007113_070--Hb_005867_020 Hb_004889_020 Hb_004889_020 Hb_007113_070--Hb_004889_020 Hb_003813_030 Hb_003813_030 Hb_000175_340--Hb_003813_030 Hb_050514_010 Hb_050514_010 Hb_000175_340--Hb_050514_010 Hb_000175_340--Hb_026889_030 Hb_003728_060 Hb_003728_060 Hb_000175_340--Hb_003728_060 Hb_000175_340--Hb_007044_120 Hb_158467_010 Hb_158467_010 Hb_032264_110--Hb_158467_010 Hb_001009_270 Hb_001009_270 Hb_032264_110--Hb_001009_270 Hb_010655_010 Hb_010655_010 Hb_032264_110--Hb_010655_010 Hb_008300_010 Hb_008300_010 Hb_032264_110--Hb_008300_010 Hb_000510_320 Hb_000510_320 Hb_032264_110--Hb_000510_320 Hb_000656_040 Hb_000656_040 Hb_032264_110--Hb_000656_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.910292 0.228028 1.79893 2.15509 1.43417 1.14851
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.58801 2.45894 2.58914 0.815868 0.399716

CAGE analysis