Hb_004884_180

Information

Type -
Description -
Location Contig4884: 134270-138298
Sequence    

Annotation

kegg
ID rcu:RCOM_0847630
description hypothetical protein
nr
ID XP_012089787.1
description PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]
swissprot
ID Q7Y1W1
description Protein TIC 56, chloroplastic OS=Arabidopsis thaliana GN=TIC56 PE=1 SV=1
trembl
ID A0A067JG01
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00428 PE=4 SV=1
Gene Ontology
ID GO:0009706
description protein tic chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45154: 136823-138380
cDNA
(Sanger)
(ID:Location)		 043_B16.ab1: 134286-135069

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004884_180 0.0 - - PREDICTED: protein TIC 56, chloroplastic [Jatropha curcas]
2 Hb_001472_160 0.0768025251 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
3 Hb_000220_210 0.0795316455 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
4 Hb_031042_060 0.0834026299 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_000771_170 0.0839434434 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
6 Hb_010174_090 0.086253508 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
7 Hb_004225_040 0.0864625906 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphratica]
8 Hb_007035_040 0.0871984556 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
9 Hb_000331_130 0.0882550827 transcription factor TF Family: Trihelix conserved hypothetical protein [Ricinus communis]
10 Hb_000300_470 0.0925260281 - - PREDICTED: nucleolin-like [Jatropha curcas]
11 Hb_026053_040 0.0931655169 - - conserved hypothetical protein [Ricinus communis]
12 Hb_025477_050 0.0932893783 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_000363_060 0.0933166032 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
14 Hb_013405_080 0.093978782 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
15 Hb_001660_120 0.0947209973 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
16 Hb_002973_110 0.0948895485 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_000309_020 0.0972903512 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
18 Hb_002600_070 0.0983468615 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
19 Hb_114310_070 0.098622934 - - GTP-dependent nucleic acid-binding protein engD, putative [Ricinus communis]
20 Hb_000613_120 0.0999553741 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004884_180 Hb_004884_180 Hb_001472_160 Hb_001472_160 Hb_004884_180--Hb_001472_160 Hb_000220_210 Hb_000220_210 Hb_004884_180--Hb_000220_210 Hb_031042_060 Hb_031042_060 Hb_004884_180--Hb_031042_060 Hb_000771_170 Hb_000771_170 Hb_004884_180--Hb_000771_170 Hb_010174_090 Hb_010174_090 Hb_004884_180--Hb_010174_090 Hb_004225_040 Hb_004225_040 Hb_004884_180--Hb_004225_040 Hb_025477_050 Hb_025477_050 Hb_001472_160--Hb_025477_050 Hb_001472_160--Hb_000220_210 Hb_001472_160--Hb_004225_040 Hb_000309_020 Hb_000309_020 Hb_001472_160--Hb_000309_020 Hb_002973_110 Hb_002973_110 Hb_001472_160--Hb_002973_110 Hb_002542_160 Hb_002542_160 Hb_000220_210--Hb_002542_160 Hb_000220_210--Hb_000309_020 Hb_000345_370 Hb_000345_370 Hb_000220_210--Hb_000345_370 Hb_001427_040 Hb_001427_040 Hb_000220_210--Hb_001427_040 Hb_001789_160 Hb_001789_160 Hb_031042_060--Hb_001789_160 Hb_000260_710 Hb_000260_710 Hb_031042_060--Hb_000260_710 Hb_000363_060 Hb_000363_060 Hb_031042_060--Hb_000363_060 Hb_031042_060--Hb_010174_090 Hb_021650_010 Hb_021650_010 Hb_031042_060--Hb_021650_010 Hb_002600_070 Hb_002600_070 Hb_000771_170--Hb_002600_070 Hb_000771_170--Hb_004225_040 Hb_000562_070 Hb_000562_070 Hb_000771_170--Hb_000562_070 Hb_000771_170--Hb_001472_160 Hb_000482_050 Hb_000482_050 Hb_000771_170--Hb_000482_050 Hb_000311_120 Hb_000311_120 Hb_010174_090--Hb_000311_120 Hb_000613_120 Hb_000613_120 Hb_010174_090--Hb_000613_120 Hb_006787_090 Hb_006787_090 Hb_010174_090--Hb_006787_090 Hb_003529_140 Hb_003529_140 Hb_010174_090--Hb_003529_140 Hb_006569_040 Hb_006569_040 Hb_010174_090--Hb_006569_040 Hb_000826_030 Hb_000826_030 Hb_010174_090--Hb_000826_030 Hb_000224_220 Hb_000224_220 Hb_004225_040--Hb_000224_220 Hb_001140_180 Hb_001140_180 Hb_004225_040--Hb_001140_180 Hb_002828_060 Hb_002828_060 Hb_004225_040--Hb_002828_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5512 12.4279 28.1183 11.1431 13.7306 12.0635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.55268 6.33473 6.28811 16.3666 38.2736

CAGE analysis