Hb_004884_220

Information

Type -
Description -
Location Contig4884: 167315-175102
Sequence    

Annotation

kegg
ID cmo:103502156
description uncharacterized protein At5g01610
nr
ID ADR71307.1
description hypothetical protein 29 [Hevea brasiliensis]
swissprot
ID Q9M015
description Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1
trembl
ID I3NMS0
description Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45160: 167313-175071
cDNA
(Sanger)
(ID:Location)		 019_I06.ab1: 167576-175071

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004884_220 0.0 - - hypothetical protein 29 [Hevea brasiliensis]
2 Hb_004738_080 0.0888293832 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
3 Hb_002477_240 0.08973658 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
4 Hb_000329_690 0.0906238595 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
5 Hb_005535_050 0.0967350713 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
6 Hb_000977_080 0.0968630736 - - type II inositol 5-phosphatase, putative [Ricinus communis]
7 Hb_000417_180 0.0968824311 - - 60S ribosomal protein L11, putative [Ricinus communis]
8 Hb_002553_020 0.0976471049 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000260_050 0.0977535481 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
10 Hb_000473_040 0.098095975 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
11 Hb_000392_270 0.0987066436 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
12 Hb_000538_020 0.0992189301 - - PREDICTED: autophagy protein 5 [Jatropha curcas]
13 Hb_011537_010 0.0993737113 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
14 Hb_003878_190 0.1001339377 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
15 Hb_001828_090 0.1002552084 - - prohibitin, putative [Ricinus communis]
16 Hb_000107_390 0.1030640633 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
17 Hb_001379_060 0.1035784952 - - PREDICTED: uncharacterized protein LOC105650815 isoform X1 [Jatropha curcas]
18 Hb_042202_010 0.1063770861 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
19 Hb_000155_190 0.1068157696 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001629_110 0.107296666 - - PREDICTED: uncharacterized protein LOC105632808 [Jatropha curcas]

Gene co-expression network

sample Hb_004884_220 Hb_004884_220 Hb_004738_080 Hb_004738_080 Hb_004884_220--Hb_004738_080 Hb_002477_240 Hb_002477_240 Hb_004884_220--Hb_002477_240 Hb_000329_690 Hb_000329_690 Hb_004884_220--Hb_000329_690 Hb_005535_050 Hb_005535_050 Hb_004884_220--Hb_005535_050 Hb_000977_080 Hb_000977_080 Hb_004884_220--Hb_000977_080 Hb_000417_180 Hb_000417_180 Hb_004884_220--Hb_000417_180 Hb_004738_080--Hb_002477_240 Hb_000703_140 Hb_000703_140 Hb_004738_080--Hb_000703_140 Hb_000260_080 Hb_000260_080 Hb_004738_080--Hb_000260_080 Hb_000494_020 Hb_000494_020 Hb_004738_080--Hb_000494_020 Hb_004931_090 Hb_004931_090 Hb_004738_080--Hb_004931_090 Hb_003687_110 Hb_003687_110 Hb_004738_080--Hb_003687_110 Hb_001754_150 Hb_001754_150 Hb_002477_240--Hb_001754_150 Hb_042202_010 Hb_042202_010 Hb_002477_240--Hb_042202_010 Hb_000260_050 Hb_000260_050 Hb_002477_240--Hb_000260_050 Hb_002477_240--Hb_000703_140 Hb_009767_120 Hb_009767_120 Hb_002477_240--Hb_009767_120 Hb_168918_020 Hb_168918_020 Hb_000329_690--Hb_168918_020 Hb_000107_390 Hb_000107_390 Hb_000329_690--Hb_000107_390 Hb_000345_560 Hb_000345_560 Hb_000329_690--Hb_000345_560 Hb_033080_010 Hb_033080_010 Hb_000329_690--Hb_033080_010 Hb_000329_690--Hb_001754_150 Hb_019962_030 Hb_019962_030 Hb_005535_050--Hb_019962_030 Hb_010128_130 Hb_010128_130 Hb_005535_050--Hb_010128_130 Hb_000473_040 Hb_000473_040 Hb_005535_050--Hb_000473_040 Hb_001369_650 Hb_001369_650 Hb_005535_050--Hb_001369_650 Hb_143766_090 Hb_143766_090 Hb_005535_050--Hb_143766_090 Hb_005332_070 Hb_005332_070 Hb_005535_050--Hb_005332_070 Hb_000392_270 Hb_000392_270 Hb_000977_080--Hb_000392_270 Hb_003551_020 Hb_003551_020 Hb_000977_080--Hb_003551_020 Hb_000045_130 Hb_000045_130 Hb_000977_080--Hb_000045_130 Hb_004645_050 Hb_004645_050 Hb_000977_080--Hb_004645_050 Hb_000977_080--Hb_001369_650 Hb_000019_230 Hb_000019_230 Hb_000977_080--Hb_000019_230 Hb_000017_120 Hb_000017_120 Hb_000417_180--Hb_000017_120 Hb_010863_080 Hb_010863_080 Hb_000417_180--Hb_010863_080 Hb_000417_180--Hb_000107_390 Hb_005527_050 Hb_005527_050 Hb_000417_180--Hb_005527_050 Hb_003297_030 Hb_003297_030 Hb_000417_180--Hb_003297_030 Hb_007426_230 Hb_007426_230 Hb_000417_180--Hb_007426_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
268.313 64.5721 68.8993 63.9636 307.293 166.52
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
180.518 343.996 167.224 48.1024 36.8683

CAGE analysis