Hb_004888_020

Information

Type transcription factor
Description TF Family: TCP
Location Contig4888: 41701-42519
Sequence    

Annotation

kegg
ID tcc:TCM_007700
description TCP family transcription factor
nr
ID XP_012070794.1
description PREDICTED: transcription factor TCP7-like [Jatropha curcas]
swissprot
ID Q9FMX2
description Transcription factor TCP7 OS=Arabidopsis thaliana GN=TCP7 PE=2 SV=1
trembl
ID A0A067LCW2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10156 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45162: 41593-43545
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004888_020 0.0 transcription factor TF Family: TCP PREDICTED: transcription factor TCP7-like [Jatropha curcas]
2 Hb_005993_020 0.0783456529 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
3 Hb_002163_030 0.0825631746 - - PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform [Jatropha curcas]
4 Hb_000062_250 0.0859143924 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
5 Hb_000562_090 0.0941326004 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
6 Hb_000134_090 0.0950968439 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
7 Hb_001680_010 0.0955734094 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]
8 Hb_001301_200 0.096272526 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
9 Hb_005532_050 0.0969686257 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
10 Hb_005306_100 0.0997550217 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
11 Hb_005054_180 0.1009037692 - - coronatine-insensitive 1 [Hevea brasiliensis]
12 Hb_001021_170 0.1025185521 - - PREDICTED: uncharacterized protein LOC105642474 [Jatropha curcas]
13 Hb_001252_010 0.1025632082 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
14 Hb_000181_070 0.1028595818 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000077_230 0.1030470039 - - PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]
16 Hb_001226_030 0.1031407011 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 [Jatropha curcas]
17 Hb_007477_080 0.104886883 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006847_040 0.1055042247 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 1 [Jatropha curcas]
19 Hb_002671_140 0.1069549915 - - calcium-dependent protein kinase [Hevea brasiliensis]
20 Hb_001728_100 0.1077576893 - - hypothetical protein JCGZ_03429 [Jatropha curcas]

Gene co-expression network

sample Hb_004888_020 Hb_004888_020 Hb_005993_020 Hb_005993_020 Hb_004888_020--Hb_005993_020 Hb_002163_030 Hb_002163_030 Hb_004888_020--Hb_002163_030 Hb_000062_250 Hb_000062_250 Hb_004888_020--Hb_000062_250 Hb_000562_090 Hb_000562_090 Hb_004888_020--Hb_000562_090 Hb_000134_090 Hb_000134_090 Hb_004888_020--Hb_000134_090 Hb_001680_010 Hb_001680_010 Hb_004888_020--Hb_001680_010 Hb_005993_020--Hb_001680_010 Hb_002131_020 Hb_002131_020 Hb_005993_020--Hb_002131_020 Hb_001301_200 Hb_001301_200 Hb_005993_020--Hb_001301_200 Hb_011671_430 Hb_011671_430 Hb_005993_020--Hb_011671_430 Hb_005532_050 Hb_005532_050 Hb_005993_020--Hb_005532_050 Hb_000630_050 Hb_000630_050 Hb_005993_020--Hb_000630_050 Hb_001252_010 Hb_001252_010 Hb_002163_030--Hb_001252_010 Hb_003609_030 Hb_003609_030 Hb_002163_030--Hb_003609_030 Hb_020000_020 Hb_020000_020 Hb_002163_030--Hb_020000_020 Hb_000283_070 Hb_000283_070 Hb_002163_030--Hb_000283_070 Hb_011030_010 Hb_011030_010 Hb_002163_030--Hb_011030_010 Hb_000077_230 Hb_000077_230 Hb_000062_250--Hb_000077_230 Hb_001584_150 Hb_001584_150 Hb_000062_250--Hb_001584_150 Hb_015807_070 Hb_015807_070 Hb_000062_250--Hb_015807_070 Hb_000000_370 Hb_000000_370 Hb_000062_250--Hb_000000_370 Hb_007757_110 Hb_007757_110 Hb_000062_250--Hb_007757_110 Hb_000077_070 Hb_000077_070 Hb_000062_250--Hb_000077_070 Hb_002671_140 Hb_002671_140 Hb_000562_090--Hb_002671_140 Hb_000562_090--Hb_003609_030 Hb_008643_210 Hb_008643_210 Hb_000562_090--Hb_008643_210 Hb_013399_100 Hb_013399_100 Hb_000562_090--Hb_013399_100 Hb_003464_050 Hb_003464_050 Hb_000562_090--Hb_003464_050 Hb_000915_020 Hb_000915_020 Hb_000562_090--Hb_000915_020 Hb_002030_030 Hb_002030_030 Hb_000134_090--Hb_002030_030 Hb_001862_190 Hb_001862_190 Hb_000134_090--Hb_001862_190 Hb_004096_030 Hb_004096_030 Hb_000134_090--Hb_004096_030 Hb_004934_090 Hb_004934_090 Hb_000134_090--Hb_004934_090 Hb_006922_100 Hb_006922_100 Hb_000134_090--Hb_006922_100 Hb_004724_200 Hb_004724_200 Hb_000134_090--Hb_004724_200 Hb_001680_010--Hb_005532_050 Hb_001680_010--Hb_002131_020 Hb_001680_010--Hb_001301_200 Hb_002835_370 Hb_002835_370 Hb_001680_010--Hb_002835_370 Hb_001541_020 Hb_001541_020 Hb_001680_010--Hb_001541_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.2566 67.5419 21.0406 39.4992 51.7776 91.5054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
69.2846 33.4906 70.5944 23.4071 26.9119

CAGE analysis