Hb_004897_020

Information

Type -
Description -
Location Contig4897: 15747-17431
Sequence    

Annotation

kegg
ID pop:POPTR_0001s44080g
description hypothetical protein
nr
ID XP_011048258.1
description PREDICTED: (-)-germacrene D synthase-like [Populus euphratica]
swissprot
ID Q6Q3H3
description (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1
trembl
ID U5GXM1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s44080g PE=4 SV=1
Gene Ontology
ID GO:0000287
description (-)-germacrene d synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004897_020 0.0 - - PREDICTED: (-)-germacrene D synthase-like [Populus euphratica]
2 Hb_001579_230 0.1036340551 - - PREDICTED: uncharacterized protein LOC105644968 [Jatropha curcas]
3 Hb_001105_010 0.1110561253 desease resistance Gene Name: AIG1 PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
4 Hb_000094_330 0.1123277214 - - PREDICTED: COP9 signalosome complex subunit 4 [Jatropha curcas]
5 Hb_002205_210 0.1168706743 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 isoform X2 [Jatropha curcas]
6 Hb_033834_030 0.1198345196 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
7 Hb_022132_050 0.1198909797 - - GTP binding protein, putative [Ricinus communis]
8 Hb_022181_030 0.1199331445 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
9 Hb_027043_020 0.1203062014 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002918_030 0.1213365378 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
11 Hb_001405_120 0.1229881348 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
12 Hb_000836_170 0.1232985615 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
13 Hb_000326_050 0.1235772003 - - Phenylalanyl-tRNA synthetase alpha chain isoform 2 [Theobroma cacao]
14 Hb_001766_150 0.1243451472 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
15 Hb_004055_170 0.124926599 - - nucleosome assembly protein, putative [Ricinus communis]
16 Hb_003582_080 0.1255214384 - - iaa-alanine resistance protein, putative [Ricinus communis]
17 Hb_000272_020 0.1265067365 - - oxidoreductase, putative [Ricinus communis]
18 Hb_004122_040 0.1273249188 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
19 Hb_001214_060 0.1287709225 - - PREDICTED: phosphoinositide phosphatase SAC8 [Jatropha curcas]
20 Hb_000351_120 0.1288548359 - - hypothetical protein POPTR_0013s10290g [Populus trichocarpa]

Gene co-expression network

sample Hb_004897_020 Hb_004897_020 Hb_001579_230 Hb_001579_230 Hb_004897_020--Hb_001579_230 Hb_001105_010 Hb_001105_010 Hb_004897_020--Hb_001105_010 Hb_000094_330 Hb_000094_330 Hb_004897_020--Hb_000094_330 Hb_002205_210 Hb_002205_210 Hb_004897_020--Hb_002205_210 Hb_033834_030 Hb_033834_030 Hb_004897_020--Hb_033834_030 Hb_022132_050 Hb_022132_050 Hb_004897_020--Hb_022132_050 Hb_002918_030 Hb_002918_030 Hb_001579_230--Hb_002918_030 Hb_000000_360 Hb_000000_360 Hb_001579_230--Hb_000000_360 Hb_004122_040 Hb_004122_040 Hb_001579_230--Hb_004122_040 Hb_002110_230 Hb_002110_230 Hb_001579_230--Hb_002110_230 Hb_000836_170 Hb_000836_170 Hb_001579_230--Hb_000836_170 Hb_004195_130 Hb_004195_130 Hb_001579_230--Hb_004195_130 Hb_007632_110 Hb_007632_110 Hb_001105_010--Hb_007632_110 Hb_135377_010 Hb_135377_010 Hb_001105_010--Hb_135377_010 Hb_003467_010 Hb_003467_010 Hb_001105_010--Hb_003467_010 Hb_006355_010 Hb_006355_010 Hb_001105_010--Hb_006355_010 Hb_009222_010 Hb_009222_010 Hb_001105_010--Hb_009222_010 Hb_000392_050 Hb_000392_050 Hb_001105_010--Hb_000392_050 Hb_002876_240 Hb_002876_240 Hb_000094_330--Hb_002876_240 Hb_006570_140 Hb_006570_140 Hb_000094_330--Hb_006570_140 Hb_002820_050 Hb_002820_050 Hb_000094_330--Hb_002820_050 Hb_001922_170 Hb_001922_170 Hb_000094_330--Hb_001922_170 Hb_146673_010 Hb_146673_010 Hb_000094_330--Hb_146673_010 Hb_002820_110 Hb_002820_110 Hb_000094_330--Hb_002820_110 Hb_001040_100 Hb_001040_100 Hb_002205_210--Hb_001040_100 Hb_168978_030 Hb_168978_030 Hb_002205_210--Hb_168978_030 Hb_063716_100 Hb_063716_100 Hb_002205_210--Hb_063716_100 Hb_000640_170 Hb_000640_170 Hb_002205_210--Hb_000640_170 Hb_001599_040 Hb_001599_040 Hb_002205_210--Hb_001599_040 Hb_000302_310 Hb_000302_310 Hb_002205_210--Hb_000302_310 Hb_001051_080 Hb_001051_080 Hb_033834_030--Hb_001051_080 Hb_001143_180 Hb_001143_180 Hb_033834_030--Hb_001143_180 Hb_005337_090 Hb_005337_090 Hb_033834_030--Hb_005337_090 Hb_002175_030 Hb_002175_030 Hb_033834_030--Hb_002175_030 Hb_000120_430 Hb_000120_430 Hb_033834_030--Hb_000120_430 Hb_000020_150 Hb_000020_150 Hb_033834_030--Hb_000020_150 Hb_073973_130 Hb_073973_130 Hb_022132_050--Hb_073973_130 Hb_002872_030 Hb_002872_030 Hb_022132_050--Hb_002872_030 Hb_000392_230 Hb_000392_230 Hb_022132_050--Hb_000392_230 Hb_006588_070 Hb_006588_070 Hb_022132_050--Hb_006588_070 Hb_000649_230 Hb_000649_230 Hb_022132_050--Hb_000649_230 Hb_027428_010 Hb_027428_010 Hb_022132_050--Hb_027428_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.95282 0.529223 1.41988 1.00268 0.912705 2.0703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.43879 1.65422 0.379387 1.07967 0.603168

CAGE analysis