Hb_004899_030

Information

Type -
Description -
Location Contig4899: 13635-16246
Sequence    

Annotation

kegg
ID rcu:RCOM_0710470
description groes chaperonin, putative
nr
ID XP_012077092.1
description PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
swissprot
ID O65282
description 20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2
trembl
ID A0A067KG15
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07519 PE=3 SV=1
Gene Ontology
ID GO:0005737
description 20 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45183: 13686-15893
cDNA
(Sanger)
(ID:Location)		 007_K05.ab1: 13686-15456 , 026_K11.ab1: 13694-14908 , 042_M08.ab1: 13694-15458

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004899_030 0.0 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
2 Hb_028707_090 0.0874364613 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
3 Hb_009851_110 0.0911204298 - - structural constituent of ribosome, putative [Ricinus communis]
4 Hb_002301_270 0.0916683474 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
5 Hb_005895_040 0.0947528159 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]
6 Hb_001396_290 0.0980098136 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
7 Hb_001473_080 0.098029283 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
8 Hb_008518_050 0.0995077824 - - hypothetical protein F383_31148 [Gossypium arboreum]
9 Hb_004374_150 0.1005454941 - - PREDICTED: uncharacterized protein LOC105650290 isoform X1 [Jatropha curcas]
10 Hb_009151_020 0.1016685906 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
11 Hb_004656_060 0.1022214637 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
12 Hb_002612_010 0.1030555645 - - hypothetical protein JCGZ_19269 [Jatropha curcas]
13 Hb_004701_030 0.105450199 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
14 Hb_004376_030 0.1055736953 transcription factor TF Family: mTERF hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris]
15 Hb_005408_020 0.1056460065 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007951_100 0.1061313266 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
17 Hb_002411_120 0.1069966159 - - PREDICTED: uncharacterized protein LOC105631645 [Jatropha curcas]
18 Hb_006829_090 0.1083660659 - - PREDICTED: protein MOS2 [Jatropha curcas]
19 Hb_001771_120 0.1086315812 - - K+ transport growth defect-like protein [Hevea brasiliensis]
20 Hb_000504_160 0.109016494 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]

Gene co-expression network

sample Hb_004899_030 Hb_004899_030 Hb_028707_090 Hb_028707_090 Hb_004899_030--Hb_028707_090 Hb_009851_110 Hb_009851_110 Hb_004899_030--Hb_009851_110 Hb_002301_270 Hb_002301_270 Hb_004899_030--Hb_002301_270 Hb_005895_040 Hb_005895_040 Hb_004899_030--Hb_005895_040 Hb_001396_290 Hb_001396_290 Hb_004899_030--Hb_001396_290 Hb_001473_080 Hb_001473_080 Hb_004899_030--Hb_001473_080 Hb_000104_080 Hb_000104_080 Hb_028707_090--Hb_000104_080 Hb_000640_020 Hb_000640_020 Hb_028707_090--Hb_000640_020 Hb_002477_130 Hb_002477_130 Hb_028707_090--Hb_002477_130 Hb_000640_220 Hb_000640_220 Hb_028707_090--Hb_000640_220 Hb_008518_050 Hb_008518_050 Hb_028707_090--Hb_008518_050 Hb_008143_030 Hb_008143_030 Hb_028707_090--Hb_008143_030 Hb_004656_060 Hb_004656_060 Hb_009851_110--Hb_004656_060 Hb_009851_110--Hb_005895_040 Hb_000422_140 Hb_000422_140 Hb_009851_110--Hb_000422_140 Hb_004701_030 Hb_004701_030 Hb_009851_110--Hb_004701_030 Hb_003091_010 Hb_003091_010 Hb_009851_110--Hb_003091_010 Hb_028872_120 Hb_028872_120 Hb_002301_270--Hb_028872_120 Hb_009151_020 Hb_009151_020 Hb_002301_270--Hb_009151_020 Hb_000347_570 Hb_000347_570 Hb_002301_270--Hb_000347_570 Hb_022693_030 Hb_022693_030 Hb_002301_270--Hb_022693_030 Hb_001178_150 Hb_001178_150 Hb_002301_270--Hb_001178_150 Hb_007943_120 Hb_007943_120 Hb_002301_270--Hb_007943_120 Hb_005895_040--Hb_000422_140 Hb_005895_040--Hb_009151_020 Hb_005895_040--Hb_002477_130 Hb_005895_040--Hb_004656_060 Hb_005895_040--Hb_004701_030 Hb_002499_070 Hb_002499_070 Hb_005895_040--Hb_002499_070 Hb_000120_510 Hb_000120_510 Hb_001396_290--Hb_000120_510 Hb_004225_130 Hb_004225_130 Hb_001396_290--Hb_004225_130 Hb_002048_090 Hb_002048_090 Hb_001396_290--Hb_002048_090 Hb_000504_160 Hb_000504_160 Hb_001396_290--Hb_000504_160 Hb_006829_090 Hb_006829_090 Hb_001396_290--Hb_006829_090 Hb_073171_080 Hb_073171_080 Hb_001396_290--Hb_073171_080 Hb_001922_130 Hb_001922_130 Hb_001473_080--Hb_001922_130 Hb_001946_240 Hb_001946_240 Hb_001473_080--Hb_001946_240 Hb_003125_060 Hb_003125_060 Hb_001473_080--Hb_003125_060 Hb_000120_570 Hb_000120_570 Hb_001473_080--Hb_000120_570 Hb_010883_080 Hb_010883_080 Hb_001473_080--Hb_010883_080 Hb_002675_040 Hb_002675_040 Hb_001473_080--Hb_002675_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
332.403 231.87 188.656 87.4258 584.005 454.19
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
170.897 103.537 63.8271 83.995 115.23

CAGE analysis