Hb_004899_050

Information

Type -
Description -
Location Contig4899: 39595-42441
Sequence    

Annotation

kegg
ID tcc:TCM_037483
description Uncharacterized protein isoform 1
nr
ID XP_012077113.1
description PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061GM51
description Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_037483 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45190: 39593-42358 , PASA_asmbl_45191: 40153-40340
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004899_050 0.0 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
2 Hb_007002_030 0.0717025276 - - PREDICTED: transmembrane protein 205 [Jatropha curcas]
3 Hb_000053_100 0.1076210869 - - PREDICTED: uncharacterized protein LOC105642071 [Jatropha curcas]
4 Hb_002596_040 0.1096727139 - - PREDICTED: uncharacterized protein LOC105645264 isoform X2 [Jatropha curcas]
5 Hb_002893_080 0.1144090116 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
6 Hb_007317_180 0.1150534507 - - hypothetical protein CICLE_v10028933mg [Citrus clementina]
7 Hb_000994_120 0.1163949643 - - unknown [Populus trichocarpa]
8 Hb_076693_030 0.1196314077 - - PREDICTED: serine/arginine-rich-splicing factor SR34-like [Populus euphratica]
9 Hb_001824_010 0.1255022477 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
10 Hb_000599_300 0.1255498632 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
11 Hb_002660_050 0.1261767903 - - PREDICTED: uncharacterized protein LOC105642218 [Jatropha curcas]
12 Hb_011310_190 0.1274993942 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
13 Hb_006816_210 0.1281052567 - - PREDICTED: GTP-binding protein SAR1A [Nelumbo nucifera]
14 Hb_005016_050 0.1285133935 - - -
15 Hb_027472_150 0.1296505815 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Jatropha curcas]
16 Hb_011671_040 0.1300762988 - - PREDICTED: uncharacterized protein LOC105646469 isoform X2 [Jatropha curcas]
17 Hb_015807_040 0.1320193315 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
18 Hb_001584_080 0.1326267196 - - hypothetical protein JCGZ_23206 [Jatropha curcas]
19 Hb_032717_080 0.1342101837 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
20 Hb_001833_110 0.1342989067 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004899_050 Hb_004899_050 Hb_007002_030 Hb_007002_030 Hb_004899_050--Hb_007002_030 Hb_000053_100 Hb_000053_100 Hb_004899_050--Hb_000053_100 Hb_002596_040 Hb_002596_040 Hb_004899_050--Hb_002596_040 Hb_002893_080 Hb_002893_080 Hb_004899_050--Hb_002893_080 Hb_007317_180 Hb_007317_180 Hb_004899_050--Hb_007317_180 Hb_000994_120 Hb_000994_120 Hb_004899_050--Hb_000994_120 Hb_007002_030--Hb_000053_100 Hb_002016_100 Hb_002016_100 Hb_007002_030--Hb_002016_100 Hb_020400_050 Hb_020400_050 Hb_007002_030--Hb_020400_050 Hb_000347_030 Hb_000347_030 Hb_007002_030--Hb_000347_030 Hb_000125_190 Hb_000125_190 Hb_007002_030--Hb_000125_190 Hb_001833_110 Hb_001833_110 Hb_000053_100--Hb_001833_110 Hb_012053_070 Hb_012053_070 Hb_000053_100--Hb_012053_070 Hb_000053_100--Hb_002016_100 Hb_024185_020 Hb_024185_020 Hb_000053_100--Hb_024185_020 Hb_001369_690 Hb_001369_690 Hb_000053_100--Hb_001369_690 Hb_002296_040 Hb_002296_040 Hb_002596_040--Hb_002296_040 Hb_076693_030 Hb_076693_030 Hb_002596_040--Hb_076693_030 Hb_008695_040 Hb_008695_040 Hb_002596_040--Hb_008695_040 Hb_001421_060 Hb_001421_060 Hb_002596_040--Hb_001421_060 Hb_010180_010 Hb_010180_010 Hb_002596_040--Hb_010180_010 Hb_002662_030 Hb_002662_030 Hb_002596_040--Hb_002662_030 Hb_007017_030 Hb_007017_030 Hb_002893_080--Hb_007017_030 Hb_008406_190 Hb_008406_190 Hb_002893_080--Hb_008406_190 Hb_000599_300 Hb_000599_300 Hb_002893_080--Hb_000599_300 Hb_003633_030 Hb_003633_030 Hb_002893_080--Hb_003633_030 Hb_000116_440 Hb_000116_440 Hb_002893_080--Hb_000116_440 Hb_001579_220 Hb_001579_220 Hb_002893_080--Hb_001579_220 Hb_004970_110 Hb_004970_110 Hb_007317_180--Hb_004970_110 Hb_007254_040 Hb_007254_040 Hb_007317_180--Hb_007254_040 Hb_011310_190 Hb_011310_190 Hb_007317_180--Hb_011310_190 Hb_004048_070 Hb_004048_070 Hb_007317_180--Hb_004048_070 Hb_002027_070 Hb_002027_070 Hb_007317_180--Hb_002027_070 Hb_008554_020 Hb_008554_020 Hb_007317_180--Hb_008554_020 Hb_008103_050 Hb_008103_050 Hb_000994_120--Hb_008103_050 Hb_000141_080 Hb_000141_080 Hb_000994_120--Hb_000141_080 Hb_009787_030 Hb_009787_030 Hb_000994_120--Hb_009787_030 Hb_000994_120--Hb_000599_300 Hb_004127_030 Hb_004127_030 Hb_000994_120--Hb_004127_030 Hb_001703_060 Hb_001703_060 Hb_000994_120--Hb_001703_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.86139 2.62296 4.95729 14.9988 10.2136 17.8235
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.2745 12.8552 10.2093 12.5789 8.35099

CAGE analysis