Hb_004899_070

Information

Type -
Description -
Location Contig4899: 55772-65744
Sequence    

Annotation

kegg
ID rcu:RCOM_0710220
description hypothetical protein
nr
ID XP_012077110.1
description PREDICTED: RRP12-like protein [Jatropha curcas]
swissprot
ID Q5ZKD5
description RRP12-like protein OS=Gallus gallus GN=RRP12 PE=2 SV=1
trembl
ID A0A067KG27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07534 PE=4 SV=1
Gene Ontology
ID GO:0005488
description rrp12-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45193: 55731-65718 , PASA_asmbl_45194: 55718-65728
cDNA
(Sanger)
(ID:Location)		 013_M06.ab1: 64912-65718

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004899_070 0.0 - - PREDICTED: RRP12-like protein [Jatropha curcas]
2 Hb_000098_130 0.0449218771 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
3 Hb_000261_290 0.0504374519 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
4 Hb_000120_620 0.0558080191 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
5 Hb_004970_160 0.0572247308 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
6 Hb_000640_200 0.063497413 - - hypothetical protein RCOM_1346600 [Ricinus communis]
7 Hb_000813_100 0.0643366814 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
8 Hb_000313_340 0.065991002 - - DNA repair protein xp-E, putative [Ricinus communis]
9 Hb_000594_020 0.0678372251 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
10 Hb_000120_610 0.0735541983 - - mitotic control protein dis3, putative [Ricinus communis]
11 Hb_003097_180 0.0741647717 - - PREDICTED: crossover junction endonuclease MUS81 [Jatropha curcas]
12 Hb_006588_050 0.0748211035 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
13 Hb_000264_100 0.0761955101 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001946_300 0.0767415123 - - PREDICTED: F-box protein At-B [Jatropha curcas]
15 Hb_140049_020 0.0776356903 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
16 Hb_001221_160 0.0795339699 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
17 Hb_000363_130 0.0797964983 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
18 Hb_003710_040 0.0805985226 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
19 Hb_003866_020 0.0806976117 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000997_030 0.0823493506 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]

Gene co-expression network

sample Hb_004899_070 Hb_004899_070 Hb_000098_130 Hb_000098_130 Hb_004899_070--Hb_000098_130 Hb_000261_290 Hb_000261_290 Hb_004899_070--Hb_000261_290 Hb_000120_620 Hb_000120_620 Hb_004899_070--Hb_000120_620 Hb_004970_160 Hb_004970_160 Hb_004899_070--Hb_004970_160 Hb_000640_200 Hb_000640_200 Hb_004899_070--Hb_000640_200 Hb_000813_100 Hb_000813_100 Hb_004899_070--Hb_000813_100 Hb_000098_130--Hb_000261_290 Hb_000098_130--Hb_000120_620 Hb_003097_180 Hb_003097_180 Hb_000098_130--Hb_003097_180 Hb_000363_130 Hb_000363_130 Hb_000098_130--Hb_000363_130 Hb_000300_360 Hb_000300_360 Hb_000098_130--Hb_000300_360 Hb_000261_290--Hb_000120_620 Hb_000313_340 Hb_000313_340 Hb_000261_290--Hb_000313_340 Hb_000261_290--Hb_003097_180 Hb_006588_050 Hb_006588_050 Hb_000261_290--Hb_006588_050 Hb_000120_620--Hb_004970_160 Hb_000120_620--Hb_003097_180 Hb_001178_150 Hb_001178_150 Hb_000120_620--Hb_001178_150 Hb_005462_020 Hb_005462_020 Hb_004970_160--Hb_005462_020 Hb_001028_070 Hb_001028_070 Hb_004970_160--Hb_001028_070 Hb_000594_020 Hb_000594_020 Hb_004970_160--Hb_000594_020 Hb_000120_610 Hb_000120_610 Hb_004970_160--Hb_000120_610 Hb_006501_020 Hb_006501_020 Hb_000640_200--Hb_006501_020 Hb_057451_010 Hb_057451_010 Hb_000640_200--Hb_057451_010 Hb_000640_200--Hb_006588_050 Hb_000640_200--Hb_000813_100 Hb_031069_020 Hb_031069_020 Hb_000640_200--Hb_031069_020 Hb_000813_100--Hb_000594_020 Hb_000997_030 Hb_000997_030 Hb_000813_100--Hb_000997_030 Hb_147737_010 Hb_147737_010 Hb_000813_100--Hb_147737_010 Hb_000002_440 Hb_000002_440 Hb_000813_100--Hb_000002_440 Hb_001946_300 Hb_001946_300 Hb_000813_100--Hb_001946_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.1087 31.2137 10.6819 10.3359 35.0612 37.3514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5624 6.47498 7.27852 15.9016 8.87885

CAGE analysis