Hb_004899_110

Information

Type -
Description -
Location Contig4899: 105397-106005
Sequence    

Annotation

kegg
ID rcu:RCOM_1970450
description hypothetical protein
nr
ID XP_012077108.1
description PREDICTED: uncharacterized protein LOC105638015 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KCK6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07532 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45196: 105842-106053
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004899_110 0.0 - - PREDICTED: uncharacterized protein LOC105638015 [Jatropha curcas]
2 Hb_000027_170 0.0955364411 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
3 Hb_000567_330 0.1210127379 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
4 Hb_001054_040 0.1220680276 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
5 Hb_002311_280 0.1254884482 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
6 Hb_089305_010 0.1277279014 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
7 Hb_091318_010 0.1359741722 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
8 Hb_004678_030 0.1400058611 - - fructokinase [Manihot esculenta]
9 Hb_000247_140 0.1473342764 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
10 Hb_001179_010 0.1473706904 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
11 Hb_000008_200 0.1477027438 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
12 Hb_000110_260 0.1477736931 - - PREDICTED: uncharacterized protein LOC105642009 [Jatropha curcas]
13 Hb_007130_020 0.1499264994 - - -
14 Hb_001102_200 0.1500371426 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
15 Hb_022092_110 0.152784498 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
16 Hb_005064_070 0.1535121666 - - PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
17 Hb_000152_170 0.1544285815 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
18 Hb_009449_100 0.1545019577 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
19 Hb_001828_110 0.1547492513 - - PREDICTED: lysine histidine transporter 1-like [Tarenaya hassleriana]
20 Hb_004679_040 0.1549368113 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004899_110 Hb_004899_110 Hb_000027_170 Hb_000027_170 Hb_004899_110--Hb_000027_170 Hb_000567_330 Hb_000567_330 Hb_004899_110--Hb_000567_330 Hb_001054_040 Hb_001054_040 Hb_004899_110--Hb_001054_040 Hb_002311_280 Hb_002311_280 Hb_004899_110--Hb_002311_280 Hb_089305_010 Hb_089305_010 Hb_004899_110--Hb_089305_010 Hb_091318_010 Hb_091318_010 Hb_004899_110--Hb_091318_010 Hb_004678_030 Hb_004678_030 Hb_000027_170--Hb_004678_030 Hb_000008_200 Hb_000008_200 Hb_000027_170--Hb_000008_200 Hb_000027_170--Hb_001054_040 Hb_000027_170--Hb_091318_010 Hb_000316_060 Hb_000316_060 Hb_000027_170--Hb_000316_060 Hb_000567_330--Hb_089305_010 Hb_007130_020 Hb_007130_020 Hb_000567_330--Hb_007130_020 Hb_033006_020 Hb_033006_020 Hb_000567_330--Hb_033006_020 Hb_000836_090 Hb_000836_090 Hb_000567_330--Hb_000836_090 Hb_010812_060 Hb_010812_060 Hb_000567_330--Hb_010812_060 Hb_022092_110 Hb_022092_110 Hb_001054_040--Hb_022092_110 Hb_002639_050 Hb_002639_050 Hb_001054_040--Hb_002639_050 Hb_001054_040--Hb_002311_280 Hb_003266_090 Hb_003266_090 Hb_001054_040--Hb_003266_090 Hb_012404_020 Hb_012404_020 Hb_001054_040--Hb_012404_020 Hb_002518_220 Hb_002518_220 Hb_001054_040--Hb_002518_220 Hb_002311_280--Hb_007130_020 Hb_002311_280--Hb_022092_110 Hb_002311_280--Hb_003266_090 Hb_002311_280--Hb_033006_020 Hb_044653_050 Hb_044653_050 Hb_002311_280--Hb_044653_050 Hb_000181_330 Hb_000181_330 Hb_002311_280--Hb_000181_330 Hb_000120_090 Hb_000120_090 Hb_089305_010--Hb_000120_090 Hb_001621_050 Hb_001621_050 Hb_089305_010--Hb_001621_050 Hb_089305_010--Hb_010812_060 Hb_000110_260 Hb_000110_260 Hb_089305_010--Hb_000110_260 Hb_021409_110 Hb_021409_110 Hb_089305_010--Hb_021409_110 Hb_029253_010 Hb_029253_010 Hb_091318_010--Hb_029253_010 Hb_091318_010--Hb_000008_200 Hb_004679_040 Hb_004679_040 Hb_091318_010--Hb_004679_040 Hb_005357_110 Hb_005357_110 Hb_091318_010--Hb_005357_110 Hb_000032_410 Hb_000032_410 Hb_091318_010--Hb_000032_410 Hb_000915_130 Hb_000915_130 Hb_091318_010--Hb_000915_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.73807 6.90211 11.7621 10.5339 0.171325 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.395085 0.465767 0.952452 2.54457 5.27041

CAGE analysis