Hb_004899_160

Information

Type -
Description -
Location Contig4899: 146436-146970
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004899_160 0.0 - - -
2 Hb_156055_020 0.007749073 - - conserved hypothetical protein [Ricinus communis]
3 Hb_119789_010 0.0166470316 - - PREDICTED: uncharacterized protein LOC105134438 [Populus euphratica]
4 Hb_021409_060 0.0209449019 - - PREDICTED: aluminum-activated malate transporter 10-like [Jatropha curcas]
5 Hb_168436_010 0.025667634 - - PREDICTED: probable receptor-like protein kinase At1g67000-like [Citrus sinensis]
6 Hb_002127_010 0.0342118514 - - Aluminum activated malate transporter family protein, putative [Theobroma cacao]
7 Hb_000896_140 0.0382943766 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2 [Jatropha curcas]
8 Hb_007040_030 0.0389065724 - - PREDICTED: uncharacterized protein LOC103415345 [Malus domestica]
9 Hb_001268_360 0.0433582714 - - PREDICTED: uncharacterized protein LOC104447679 [Eucalyptus grandis]
10 Hb_000926_170 0.0454620168 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010896_010 0.0504358194 - - -
12 Hb_067197_020 0.0615431947 - - -
13 Hb_081445_010 0.0816058063 - - hypothetical protein JCGZ_04541 [Jatropha curcas]
14 Hb_101733_020 0.0822091865 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Jatropha curcas]
15 Hb_000002_130 0.088190216 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
16 Hb_000672_070 0.0913794109 - - PREDICTED: uncharacterized protein LOC105631678 [Jatropha curcas]
17 Hb_048826_010 0.102389071 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB28-like [Jatropha curcas]
18 Hb_002582_090 0.1050322914 - - PREDICTED: cinnamoyl-CoA reductase 1-like [Sesamum indicum]
19 Hb_005843_070 0.1099155555 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
20 Hb_132148_010 0.1146399691 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_004899_160 Hb_004899_160 Hb_156055_020 Hb_156055_020 Hb_004899_160--Hb_156055_020 Hb_119789_010 Hb_119789_010 Hb_004899_160--Hb_119789_010 Hb_021409_060 Hb_021409_060 Hb_004899_160--Hb_021409_060 Hb_168436_010 Hb_168436_010 Hb_004899_160--Hb_168436_010 Hb_002127_010 Hb_002127_010 Hb_004899_160--Hb_002127_010 Hb_000896_140 Hb_000896_140 Hb_004899_160--Hb_000896_140 Hb_156055_020--Hb_119789_010 Hb_156055_020--Hb_021409_060 Hb_156055_020--Hb_000896_140 Hb_007040_030 Hb_007040_030 Hb_156055_020--Hb_007040_030 Hb_156055_020--Hb_168436_010 Hb_119789_010--Hb_000896_140 Hb_119789_010--Hb_007040_030 Hb_000926_170 Hb_000926_170 Hb_119789_010--Hb_000926_170 Hb_119789_010--Hb_021409_060 Hb_021409_060--Hb_168436_010 Hb_021409_060--Hb_002127_010 Hb_001268_360 Hb_001268_360 Hb_021409_060--Hb_001268_360 Hb_010896_010 Hb_010896_010 Hb_021409_060--Hb_010896_010 Hb_168436_010--Hb_002127_010 Hb_168436_010--Hb_001268_360 Hb_168436_010--Hb_010896_010 Hb_002127_010--Hb_001268_360 Hb_002127_010--Hb_010896_010 Hb_067197_020 Hb_067197_020 Hb_002127_010--Hb_067197_020 Hb_000896_140--Hb_007040_030 Hb_000896_140--Hb_000926_170 Hb_000002_130 Hb_000002_130 Hb_000896_140--Hb_000002_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.797676 0.125521 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis