Hb_004899_240

Information

Type -
Description -
Location Contig4899: 202365-202721
Sequence    

Annotation

kegg
ID rcu:RCOM_0709080
description hypothetical protein
nr
ID XP_002516213.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LTV3
description Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana GN=SAUR72 PE=2 SV=1
trembl
ID B9RR44
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0709080 PE=4 SV=1
Gene Ontology
ID GO:0009733
description saur family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45205: 201987-202806
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004899_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002157_110 0.0030699791 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
3 Hb_005333_090 0.003295575 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
4 Hb_003038_020 0.0040539971 - - unnamed protein product [Coffea canephora]
5 Hb_003687_060 0.0047804778 - - conserved hypothetical protein [Ricinus communis]
6 Hb_036116_010 0.0084361362 - - JHL22C18.10 [Jatropha curcas]
7 Hb_005356_020 0.0084884249 - - glutaredoxin, grx, putative [Ricinus communis]
8 Hb_001552_010 0.0092177426 - - conserved hypothetical protein [Ricinus communis]
9 Hb_090521_010 0.0101467537 - - Major allergen Pru ar, putative [Ricinus communis]
10 Hb_000471_130 0.0126248834 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010128_140 0.0126890499 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
12 Hb_002217_010 0.0135190083 - - Peroxiredoxin, putative [Ricinus communis]
13 Hb_003849_210 0.0152344115 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
14 Hb_001002_010 0.0184398328 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006663_120 0.0196437098 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000679_180 0.0199407497 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
17 Hb_007227_020 0.0203598 - - -
18 Hb_015447_010 0.0215037066 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
19 Hb_006198_160 0.0237125641 - - hypothetical protein POPTR_0002s24290g [Populus trichocarpa]
20 Hb_101724_010 0.0289741407 - - glutamate receptor family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_004899_240 Hb_004899_240 Hb_002157_110 Hb_002157_110 Hb_004899_240--Hb_002157_110 Hb_005333_090 Hb_005333_090 Hb_004899_240--Hb_005333_090 Hb_003038_020 Hb_003038_020 Hb_004899_240--Hb_003038_020 Hb_003687_060 Hb_003687_060 Hb_004899_240--Hb_003687_060 Hb_036116_010 Hb_036116_010 Hb_004899_240--Hb_036116_010 Hb_005356_020 Hb_005356_020 Hb_004899_240--Hb_005356_020 Hb_002157_110--Hb_036116_010 Hb_002157_110--Hb_005333_090 Hb_090521_010 Hb_090521_010 Hb_002157_110--Hb_090521_010 Hb_002157_110--Hb_003038_020 Hb_002157_110--Hb_003687_060 Hb_005333_090--Hb_003038_020 Hb_005333_090--Hb_003687_060 Hb_005333_090--Hb_005356_020 Hb_001552_010 Hb_001552_010 Hb_005333_090--Hb_001552_010 Hb_003038_020--Hb_003687_060 Hb_003038_020--Hb_005356_020 Hb_003038_020--Hb_001552_010 Hb_003687_060--Hb_005356_020 Hb_003687_060--Hb_001552_010 Hb_036116_010--Hb_090521_010 Hb_000471_130 Hb_000471_130 Hb_036116_010--Hb_000471_130 Hb_002217_010 Hb_002217_010 Hb_036116_010--Hb_002217_010 Hb_001002_010 Hb_001002_010 Hb_036116_010--Hb_001002_010 Hb_005356_020--Hb_001552_010 Hb_010128_140 Hb_010128_140 Hb_005356_020--Hb_010128_140 Hb_003849_210 Hb_003849_210 Hb_005356_020--Hb_003849_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.168149 1.16134 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis