Hb_004899_260

Information

Type -
Description -
Location Contig4899: 207898-220144
Sequence    

Annotation

kegg
ID rcu:RCOM_0709070
description hypothetical protein
nr
ID XP_012077098.1
description PREDICTED: uncharacterized protein LOC105638006 [Jatropha curcas]
swissprot
ID Q40863
description Embryogenesis-associated protein EMB8 OS=Picea glauca GN=EMB8 PE=2 SV=1
trembl
ID A0A067KCT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07523 PE=4 SV=1
Gene Ontology
ID GO:0016020
description caax amino terminal protease family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45206: 208372-209792 , PASA_asmbl_45207: 209850-210250 , PASA_asmbl_45208: 211028-211342 , PASA_asmbl_45209: 211378-212548 , PASA_asmbl_45210: 212774-215991 , PASA_asmbl_45211: 218191-219769
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004899_260 0.0 - - PREDICTED: uncharacterized protein LOC105638006 [Jatropha curcas]
2 Hb_001080_090 0.0766318098 - - PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]
3 Hb_007763_070 0.085284653 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Jatropha curcas]
4 Hb_006816_370 0.0942111004 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
5 Hb_001790_080 0.0984857854 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
6 Hb_000538_280 0.1013407532 - - PREDICTED: uncharacterized protein LOC105642112 [Jatropha curcas]
7 Hb_000665_130 0.1016930693 - - PREDICTED: uncharacterized protein LOC105637599 isoform X2 [Jatropha curcas]
8 Hb_003417_040 0.1036822642 transcription factor TF Family: mTERF hypothetical protein JCGZ_10155 [Jatropha curcas]
9 Hb_001712_060 0.1038194015 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Jatropha curcas]
10 Hb_001005_130 0.1039348896 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
11 Hb_006775_130 0.1039547001 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
12 Hb_001589_010 0.1054881435 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
13 Hb_000130_260 0.106719067 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X1 [Jatropha curcas]
14 Hb_000482_190 0.1070206575 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
15 Hb_000193_330 0.1101851674 - - PREDICTED: formin-like protein 20 [Jatropha curcas]
16 Hb_000749_090 0.111258038 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_002758_010 0.1124711566 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
18 Hb_000130_320 0.1127142795 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
19 Hb_001259_020 0.1128298669 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
20 Hb_000331_560 0.1141163197 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]

Gene co-expression network

sample Hb_004899_260 Hb_004899_260 Hb_001080_090 Hb_001080_090 Hb_004899_260--Hb_001080_090 Hb_007763_070 Hb_007763_070 Hb_004899_260--Hb_007763_070 Hb_006816_370 Hb_006816_370 Hb_004899_260--Hb_006816_370 Hb_001790_080 Hb_001790_080 Hb_004899_260--Hb_001790_080 Hb_000538_280 Hb_000538_280 Hb_004899_260--Hb_000538_280 Hb_000665_130 Hb_000665_130 Hb_004899_260--Hb_000665_130 Hb_000282_080 Hb_000282_080 Hb_001080_090--Hb_000282_080 Hb_001080_090--Hb_001790_080 Hb_000130_260 Hb_000130_260 Hb_001080_090--Hb_000130_260 Hb_001589_010 Hb_001589_010 Hb_001080_090--Hb_001589_010 Hb_002758_010 Hb_002758_010 Hb_001080_090--Hb_002758_010 Hb_001712_060 Hb_001712_060 Hb_007763_070--Hb_001712_060 Hb_006775_130 Hb_006775_130 Hb_007763_070--Hb_006775_130 Hb_000193_330 Hb_000193_330 Hb_007763_070--Hb_000193_330 Hb_000465_280 Hb_000465_280 Hb_007763_070--Hb_000465_280 Hb_001789_110 Hb_001789_110 Hb_007763_070--Hb_001789_110 Hb_007763_070--Hb_000538_280 Hb_001563_010 Hb_001563_010 Hb_006816_370--Hb_001563_010 Hb_001648_020 Hb_001648_020 Hb_006816_370--Hb_001648_020 Hb_001005_130 Hb_001005_130 Hb_006816_370--Hb_001005_130 Hb_000170_130 Hb_000170_130 Hb_006816_370--Hb_000170_130 Hb_006816_370--Hb_000538_280 Hb_006816_370--Hb_000193_330 Hb_000130_320 Hb_000130_320 Hb_001790_080--Hb_000130_320 Hb_000349_240 Hb_000349_240 Hb_001790_080--Hb_000349_240 Hb_029584_070 Hb_029584_070 Hb_001790_080--Hb_029584_070 Hb_001163_060 Hb_001163_060 Hb_001790_080--Hb_001163_060 Hb_003475_020 Hb_003475_020 Hb_001790_080--Hb_003475_020 Hb_001936_090 Hb_001936_090 Hb_001790_080--Hb_001936_090 Hb_003040_050 Hb_003040_050 Hb_000538_280--Hb_003040_050 Hb_000538_280--Hb_000193_330 Hb_009288_020 Hb_009288_020 Hb_000538_280--Hb_009288_020 Hb_000538_280--Hb_001005_130 Hb_000059_230 Hb_000059_230 Hb_000538_280--Hb_000059_230 Hb_005701_130 Hb_005701_130 Hb_000538_280--Hb_005701_130 Hb_002276_020 Hb_002276_020 Hb_000665_130--Hb_002276_020 Hb_000186_050 Hb_000186_050 Hb_000665_130--Hb_000186_050 Hb_001369_750 Hb_001369_750 Hb_000665_130--Hb_001369_750 Hb_011316_090 Hb_011316_090 Hb_000665_130--Hb_011316_090 Hb_005736_020 Hb_005736_020 Hb_000665_130--Hb_005736_020 Hb_007508_060 Hb_007508_060 Hb_000665_130--Hb_007508_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.08107 5.13907 2.82831 3.99736 3.41909 3.64422
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.33876 3.589 2.22543 2.08464 9.30394

CAGE analysis