Hb_004899_270

Information

Type -
Description -
Location Contig4899: 221502-226412
Sequence    

Annotation

kegg
ID cmo:103492519
description beta-galactosidase 15-like
nr
ID XP_011648551.1
description PREDICTED: beta-galactosidase 15-like [Cucumis sativus]
swissprot
ID Q9SCV5
description Beta-galactosidase 7 OS=Arabidopsis thaliana GN=BGAL7 PE=2 SV=2
trembl
ID A0A0A0M006
description Beta-galactosidase OS=Cucumis sativus GN=Csa_1G650110 PE=3 SV=1
Gene Ontology
ID GO:0004553
description beta-galactosidase 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45213: 221423-221867
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004899_270 0.0 - - PREDICTED: beta-galactosidase 15-like [Cucumis sativus]
2 Hb_123098_010 2.05615e-05 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_028462_010 2.32694e-05 - - PREDICTED: uncharacterized protein LOC101509514 [Cicer arietinum]
4 Hb_000111_160 2.78729e-05 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
5 Hb_018006_020 8.92943e-05 - - PREDICTED: uncharacterized protein LOC105641417 [Jatropha curcas]
6 Hb_006053_010 0.0001065229 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
7 Hb_000914_160 0.0001188256 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Glycine max]
8 Hb_007393_010 0.0001377769 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
9 Hb_000413_310 0.0002358819 - - -
10 Hb_000098_160 0.0002485986 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003052_160 0.0002485986 - - -
12 Hb_002130_010 0.0003130744 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
13 Hb_061463_010 0.0003259607 - - Cucumisin precursor, putative [Ricinus communis]
14 Hb_185616_010 0.0003632595 - - Ran GTPase binding protein, putative [Ricinus communis]
15 Hb_012543_020 0.0003702536 - - -
16 Hb_000482_130 0.0003746139 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
17 Hb_000510_380 0.0003795064 - - -
18 Hb_002997_130 0.0003875599 - - -
19 Hb_000270_820 0.0522166392 - - -
20 Hb_003675_010 0.0835986952 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004899_270 Hb_004899_270 Hb_123098_010 Hb_123098_010 Hb_004899_270--Hb_123098_010 Hb_028462_010 Hb_028462_010 Hb_004899_270--Hb_028462_010 Hb_000111_160 Hb_000111_160 Hb_004899_270--Hb_000111_160 Hb_018006_020 Hb_018006_020 Hb_004899_270--Hb_018006_020 Hb_006053_010 Hb_006053_010 Hb_004899_270--Hb_006053_010 Hb_000914_160 Hb_000914_160 Hb_004899_270--Hb_000914_160 Hb_123098_010--Hb_028462_010 Hb_123098_010--Hb_000111_160 Hb_123098_010--Hb_018006_020 Hb_123098_010--Hb_006053_010 Hb_123098_010--Hb_000914_160 Hb_028462_010--Hb_000111_160 Hb_028462_010--Hb_018006_020 Hb_028462_010--Hb_006053_010 Hb_028462_010--Hb_000914_160 Hb_000111_160--Hb_018006_020 Hb_000111_160--Hb_006053_010 Hb_000111_160--Hb_000914_160 Hb_018006_020--Hb_006053_010 Hb_018006_020--Hb_000914_160 Hb_007393_010 Hb_007393_010 Hb_018006_020--Hb_007393_010 Hb_006053_010--Hb_000914_160 Hb_006053_010--Hb_007393_010 Hb_000914_160--Hb_007393_010 Hb_000413_310 Hb_000413_310 Hb_000914_160--Hb_000413_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0192299 0.0151314 0 0 0

CAGE analysis