Hb_004899_310

Information

Type -
Description -
Location Contig4899: 252615-253701
Sequence    

Annotation

kegg
ID rcu:RCOM_0710760
description hypothetical protein
nr
ID XP_002516241.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RR72
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0710760 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45214: 252684-253830
cDNA
(Sanger)
(ID:Location)		 004_O11.ab1: 252722-253709 , 004_P21.ab1: 252722-253712

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004899_310 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003442_100 0.1559620761 - - PREDICTED: uncharacterized protein LOC105650128 [Jatropha curcas]
3 Hb_005779_030 0.1794097006 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
4 Hb_000162_220 0.1799110542 - - nodulin family protein [Populus trichocarpa]
5 Hb_111051_010 0.1923329915 - - Disease resistance protein RGA2, putative [Ricinus communis]
6 Hb_000407_070 0.1982197925 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 isoform X1 [Jatropha curcas]
7 Hb_004453_070 0.1987905182 transcription factor TF Family: CPP PREDICTED: CRC domain-containing protein TSO1-like isoform X1 [Jatropha curcas]
8 Hb_012362_030 0.1995136133 - - PREDICTED: GPI-anchored protein LORELEI-like [Populus euphratica]
9 Hb_005408_070 0.2000478428 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
10 Hb_006569_060 0.2004496906 - - plasma membrane intrinsic protein PIP2;3 [Hevea brasiliensis]
11 Hb_006922_090 0.2020257696 - - PREDICTED: interaptin [Jatropha curcas]
12 Hb_003938_160 0.2030696345 - - PREDICTED: transcription factor bHLH155 [Jatropha curcas]
13 Hb_009898_040 0.2072241794 - - conserved hypothetical protein [Ricinus communis]
14 Hb_172632_050 0.2108098911 - - PREDICTED: uncharacterized protein LOC105646134 [Jatropha curcas]
15 Hb_034299_070 0.2134040036 - - actin binding protein, putative [Ricinus communis]
16 Hb_000975_350 0.2164529185 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
17 Hb_012807_130 0.2198108442 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
18 Hb_000625_090 0.2213280771 - - conserved hypothetical protein [Ricinus communis]
19 Hb_148130_020 0.2250377599 - - -
20 Hb_005363_010 0.225959661 - - hypothetical protein JCGZ_13835 [Jatropha curcas]

Gene co-expression network

sample Hb_004899_310 Hb_004899_310 Hb_003442_100 Hb_003442_100 Hb_004899_310--Hb_003442_100 Hb_005779_030 Hb_005779_030 Hb_004899_310--Hb_005779_030 Hb_000162_220 Hb_000162_220 Hb_004899_310--Hb_000162_220 Hb_111051_010 Hb_111051_010 Hb_004899_310--Hb_111051_010 Hb_000407_070 Hb_000407_070 Hb_004899_310--Hb_000407_070 Hb_004453_070 Hb_004453_070 Hb_004899_310--Hb_004453_070 Hb_001189_110 Hb_001189_110 Hb_003442_100--Hb_001189_110 Hb_006446_010 Hb_006446_010 Hb_003442_100--Hb_006446_010 Hb_001103_020 Hb_001103_020 Hb_003442_100--Hb_001103_020 Hb_003442_100--Hb_005779_030 Hb_012317_020 Hb_012317_020 Hb_003442_100--Hb_012317_020 Hb_009646_010 Hb_009646_010 Hb_005779_030--Hb_009646_010 Hb_000059_300 Hb_000059_300 Hb_005779_030--Hb_000059_300 Hb_000110_300 Hb_000110_300 Hb_005779_030--Hb_000110_300 Hb_000465_260 Hb_000465_260 Hb_005779_030--Hb_000465_260 Hb_001818_060 Hb_001818_060 Hb_005779_030--Hb_001818_060 Hb_128589_010 Hb_128589_010 Hb_005779_030--Hb_128589_010 Hb_000162_220--Hb_000407_070 Hb_000390_140 Hb_000390_140 Hb_000162_220--Hb_000390_140 Hb_000023_290 Hb_000023_290 Hb_000162_220--Hb_000023_290 Hb_000362_180 Hb_000362_180 Hb_000162_220--Hb_000362_180 Hb_006117_060 Hb_006117_060 Hb_000162_220--Hb_006117_060 Hb_000072_210 Hb_000072_210 Hb_000162_220--Hb_000072_210 Hb_005550_010 Hb_005550_010 Hb_111051_010--Hb_005550_010 Hb_000120_230 Hb_000120_230 Hb_111051_010--Hb_000120_230 Hb_008468_030 Hb_008468_030 Hb_111051_010--Hb_008468_030 Hb_041201_010 Hb_041201_010 Hb_111051_010--Hb_041201_010 Hb_006441_020 Hb_006441_020 Hb_111051_010--Hb_006441_020 Hb_013057_020 Hb_013057_020 Hb_111051_010--Hb_013057_020 Hb_111985_110 Hb_111985_110 Hb_000407_070--Hb_111985_110 Hb_012305_130 Hb_012305_130 Hb_000407_070--Hb_012305_130 Hb_021409_080 Hb_021409_080 Hb_000407_070--Hb_021409_080 Hb_002301_160 Hb_002301_160 Hb_000407_070--Hb_002301_160 Hb_004627_030 Hb_004627_030 Hb_000407_070--Hb_004627_030 Hb_000009_290 Hb_000009_290 Hb_000407_070--Hb_000009_290 Hb_001195_410 Hb_001195_410 Hb_004453_070--Hb_001195_410 Hb_000796_020 Hb_000796_020 Hb_004453_070--Hb_000796_020 Hb_006569_060 Hb_006569_060 Hb_004453_070--Hb_006569_060 Hb_000776_060 Hb_000776_060 Hb_004453_070--Hb_000776_060 Hb_012362_030 Hb_012362_030 Hb_004453_070--Hb_012362_030 Hb_000062_090 Hb_000062_090 Hb_004453_070--Hb_000062_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.426 39.5787 9.89693 108.683 1.76316 3.17607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.1927 30.05 18.413 42.5204 8.93605

CAGE analysis