Hb_004899_370

Information

Type -
Description -
Location Contig4899: 295702-301505
Sequence    

Annotation

kegg
ID gmx:100801376
description ubiquinone biosynthesis protein COQ9, mitochondrial-like
nr
ID XP_006452836.1
description hypothetical protein CICLE_v10009013mg [Citrus clementina]
swissprot
ID Q68FT1
description Ubiquinone biosynthesis protein COQ9, mitochondrial OS=Rattus norvegicus GN=Coq9 PE=2 SV=2
trembl
ID V4UTZ2
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009013mg PE=4 SV=1
Gene Ontology
ID GO:0006744
description ubiquinone biosynthesis protein coq9- mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45228: 295737-296307 , PASA_asmbl_45229: 296308-296409 , PASA_asmbl_45231: 300564-301483
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004899_370 0.0 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
2 Hb_004143_150 0.0491910896 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
3 Hb_023278_020 0.0518766862 - - Peroxin 3 isoform 1 [Theobroma cacao]
4 Hb_000001_060 0.0520245895 - - PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 [Jatropha curcas]
5 Hb_003151_040 0.0639702673 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
6 Hb_004127_020 0.0658538423 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
7 Hb_009615_070 0.0663459589 - - type X protein phosphatase-II [Populus trichocarpa]
8 Hb_002676_090 0.0698868419 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]
9 Hb_001476_080 0.0728182388 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
10 Hb_000701_100 0.0732222427 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
11 Hb_000261_140 0.0737385032 - - -
12 Hb_000340_570 0.0737512934 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
13 Hb_004889_010 0.0743984771 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
14 Hb_000005_090 0.0749879223 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
15 Hb_004108_070 0.0753286943 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
16 Hb_000805_240 0.07755111 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
17 Hb_000920_110 0.0790178209 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
18 Hb_001616_040 0.0792472052 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
19 Hb_004109_170 0.0802505839 - - PREDICTED: probable ribokinase [Jatropha curcas]
20 Hb_008453_030 0.0804620759 - - Thioredoxin superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_004899_370 Hb_004899_370 Hb_004143_150 Hb_004143_150 Hb_004899_370--Hb_004143_150 Hb_023278_020 Hb_023278_020 Hb_004899_370--Hb_023278_020 Hb_000001_060 Hb_000001_060 Hb_004899_370--Hb_000001_060 Hb_003151_040 Hb_003151_040 Hb_004899_370--Hb_003151_040 Hb_004127_020 Hb_004127_020 Hb_004899_370--Hb_004127_020 Hb_009615_070 Hb_009615_070 Hb_004899_370--Hb_009615_070 Hb_004143_150--Hb_000001_060 Hb_000920_110 Hb_000920_110 Hb_004143_150--Hb_000920_110 Hb_004143_150--Hb_004127_020 Hb_006615_240 Hb_006615_240 Hb_004143_150--Hb_006615_240 Hb_004102_110 Hb_004102_110 Hb_004143_150--Hb_004102_110 Hb_023278_020--Hb_009615_070 Hb_023278_020--Hb_004143_150 Hb_023278_020--Hb_004127_020 Hb_023278_020--Hb_000001_060 Hb_004889_010 Hb_004889_010 Hb_023278_020--Hb_004889_010 Hb_001476_080 Hb_001476_080 Hb_000001_060--Hb_001476_080 Hb_000001_060--Hb_003151_040 Hb_000005_090 Hb_000005_090 Hb_000001_060--Hb_000005_090 Hb_001766_060 Hb_001766_060 Hb_000001_060--Hb_001766_060 Hb_005846_040 Hb_005846_040 Hb_003151_040--Hb_005846_040 Hb_003151_040--Hb_001766_060 Hb_000373_070 Hb_000373_070 Hb_003151_040--Hb_000373_070 Hb_006059_050 Hb_006059_050 Hb_003151_040--Hb_006059_050 Hb_000152_500 Hb_000152_500 Hb_003151_040--Hb_000152_500 Hb_000479_090 Hb_000479_090 Hb_004127_020--Hb_000479_090 Hb_000265_050 Hb_000265_050 Hb_004127_020--Hb_000265_050 Hb_002798_020 Hb_002798_020 Hb_004127_020--Hb_002798_020 Hb_000840_180 Hb_000840_180 Hb_004127_020--Hb_000840_180 Hb_003605_090 Hb_003605_090 Hb_009615_070--Hb_003605_090 Hb_007009_010 Hb_007009_010 Hb_009615_070--Hb_007009_010 Hb_009615_070--Hb_004889_010 Hb_089032_030 Hb_089032_030 Hb_009615_070--Hb_089032_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.7328 11.8238 14.3084 19.051 10.3454 18.4916
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.8841 39.0515 23.2346 11.8827 15.2337

CAGE analysis