Hb_004907_020

Information

Type -
Description -
Location Contig4907: 45747-47936
Sequence    

Annotation

kegg
ID rcu:RCOM_0745750
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID XP_012073054.1
description PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
swissprot
ID Q9M2V7
description ABC transporter G family member 16 OS=Arabidopsis thaliana GN=ABCG16 PE=2 SV=2
trembl
ID A0A067LCF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06603 PE=3 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45289: 47288-48109
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004907_020 0.0 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
2 Hb_002260_160 0.204655722 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002112_010 0.2359304464 - - hypothetical protein POPTR_0001s45830g [Populus trichocarpa]
4 Hb_000487_280 0.2537747538 - - -
5 Hb_004136_030 0.2542371507 - - -
6 Hb_000011_340 0.2665061181 - - PREDICTED: protein LURP-one-related 11-like [Jatropha curcas]
7 Hb_001520_020 0.2671806852 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
8 Hb_007218_100 0.2709010346 - - phosphofructokinase [Hevea brasiliensis]
9 Hb_012799_020 0.273116965 - - metal ion binding protein, putative [Ricinus communis]
10 Hb_115940_010 0.2743727128 - - putative auxin-amidohydrolase precursor family protein [Populus trichocarpa]
11 Hb_100180_010 0.2790748076 - - PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
12 Hb_003052_210 0.2854076701 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001140_240 0.2854077471 - - metal ion binding protein, putative [Ricinus communis]
14 Hb_003784_050 0.2861074097 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
15 Hb_002918_040 0.2865650518 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
16 Hb_007951_130 0.2904382154 desease resistance Gene Name: UBN2_3 JHL25H03.6 [Jatropha curcas]
17 Hb_021888_120 0.2916424061 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
18 Hb_000096_130 0.294772247 - - hypothetical protein 23 [Hevea brasiliensis]
19 Hb_000836_140 0.2954703585 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
20 Hb_002928_210 0.2961428497 - - -

Gene co-expression network

sample Hb_004907_020 Hb_004907_020 Hb_002260_160 Hb_002260_160 Hb_004907_020--Hb_002260_160 Hb_002112_010 Hb_002112_010 Hb_004907_020--Hb_002112_010 Hb_000487_280 Hb_000487_280 Hb_004907_020--Hb_000487_280 Hb_004136_030 Hb_004136_030 Hb_004907_020--Hb_004136_030 Hb_000011_340 Hb_000011_340 Hb_004907_020--Hb_000011_340 Hb_001520_020 Hb_001520_020 Hb_004907_020--Hb_001520_020 Hb_100180_010 Hb_100180_010 Hb_002260_160--Hb_100180_010 Hb_007218_100 Hb_007218_100 Hb_002260_160--Hb_007218_100 Hb_004429_110 Hb_004429_110 Hb_002260_160--Hb_004429_110 Hb_021888_120 Hb_021888_120 Hb_002260_160--Hb_021888_120 Hb_001140_240 Hb_001140_240 Hb_002260_160--Hb_001140_240 Hb_002112_010--Hb_100180_010 Hb_002112_010--Hb_007218_100 Hb_010827_020 Hb_010827_020 Hb_002112_010--Hb_010827_020 Hb_003376_290 Hb_003376_290 Hb_002112_010--Hb_003376_290 Hb_060618_010 Hb_060618_010 Hb_002112_010--Hb_060618_010 Hb_000487_280--Hb_000011_340 Hb_000487_280--Hb_001520_020 Hb_116349_010 Hb_116349_010 Hb_000487_280--Hb_116349_010 Hb_010422_080 Hb_010422_080 Hb_000487_280--Hb_010422_080 Hb_008954_010 Hb_008954_010 Hb_000487_280--Hb_008954_010 Hb_001348_110 Hb_001348_110 Hb_000487_280--Hb_001348_110 Hb_000828_050 Hb_000828_050 Hb_004136_030--Hb_000828_050 Hb_000252_110 Hb_000252_110 Hb_004136_030--Hb_000252_110 Hb_004453_080 Hb_004453_080 Hb_004136_030--Hb_004453_080 Hb_001366_070 Hb_001366_070 Hb_004136_030--Hb_001366_070 Hb_001433_110 Hb_001433_110 Hb_004136_030--Hb_001433_110 Hb_002374_380 Hb_002374_380 Hb_004136_030--Hb_002374_380 Hb_000011_340--Hb_001520_020 Hb_000011_340--Hb_001348_110 Hb_000011_340--Hb_008954_010 Hb_000804_030 Hb_000804_030 Hb_000011_340--Hb_000804_030 Hb_000011_340--Hb_116349_010 Hb_001520_020--Hb_001348_110 Hb_001520_020--Hb_008954_010 Hb_001520_020--Hb_000804_030 Hb_009954_050 Hb_009954_050 Hb_001520_020--Hb_009954_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00898888 1.36217 0.354124 0.42519 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8221 10.9081 1.31301 7.94436 0.953046

CAGE analysis