Hb_004907_080

Information

Type -
Description -
Location Contig4907: 123615-129575
Sequence    

Annotation

kegg
ID rcu:RCOM_1481410
description zinc finger protein, putative
nr
ID XP_002524216.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9VD44
description Poly(A) RNA polymerase gld-2 homolog A OS=Drosophila melanogaster GN=Gld2 PE=1 SV=3
trembl
ID B9SDZ7
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1481410 PE=4 SV=1
Gene Ontology
ID GO:0008152
description poly rna polymerase gld2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45292: 124069-129781 , PASA_asmbl_45293: 124012-129781 , PASA_asmbl_45294: 124636-125627 , PASA_asmbl_45296: 128513-128725
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004907_080 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_001009_270 0.0536379012 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
3 Hb_000451_010 0.0553808779 - - secretory carrier membrane protein, putative [Ricinus communis]
4 Hb_011671_240 0.0718152512 - - PREDICTED: WD repeat-containing protein WRAP73-like [Jatropha curcas]
5 Hb_032208_090 0.0726317906 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
6 Hb_003177_030 0.0753505062 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
7 Hb_000777_040 0.0801806899 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
8 Hb_000618_040 0.0815149879 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
9 Hb_004109_090 0.0818581533 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_000175_460 0.082483153 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
11 Hb_002830_030 0.0846266534 - - PREDICTED: CDK5RAP3-like protein [Jatropha curcas]
12 Hb_001799_210 0.0847279244 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
13 Hb_000465_160 0.0854723357 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
14 Hb_000409_020 0.0863212738 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
15 Hb_001632_040 0.0876715008 - - PREDICTED: transmembrane protein adipocyte-associated 1 homolog isoform X1 [Jatropha curcas]
16 Hb_032264_110 0.0884601201 - - PREDICTED: uncharacterized protein LOC105648219 [Jatropha curcas]
17 Hb_000019_030 0.0888461742 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
18 Hb_000676_250 0.0897623162 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
19 Hb_003175_010 0.0899871979 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
20 Hb_008511_130 0.0904386645 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]

Gene co-expression network

sample Hb_004907_080 Hb_004907_080 Hb_001009_270 Hb_001009_270 Hb_004907_080--Hb_001009_270 Hb_000451_010 Hb_000451_010 Hb_004907_080--Hb_000451_010 Hb_011671_240 Hb_011671_240 Hb_004907_080--Hb_011671_240 Hb_032208_090 Hb_032208_090 Hb_004907_080--Hb_032208_090 Hb_003177_030 Hb_003177_030 Hb_004907_080--Hb_003177_030 Hb_000777_040 Hb_000777_040 Hb_004907_080--Hb_000777_040 Hb_001009_270--Hb_032208_090 Hb_001009_270--Hb_003177_030 Hb_001009_270--Hb_000777_040 Hb_001799_210 Hb_001799_210 Hb_001009_270--Hb_001799_210 Hb_000465_160 Hb_000465_160 Hb_001009_270--Hb_000465_160 Hb_000618_040 Hb_000618_040 Hb_000451_010--Hb_000618_040 Hb_000451_010--Hb_011671_240 Hb_007904_200 Hb_007904_200 Hb_000451_010--Hb_007904_200 Hb_000010_330 Hb_000010_330 Hb_000451_010--Hb_000010_330 Hb_000451_010--Hb_032208_090 Hb_000019_030 Hb_000019_030 Hb_011671_240--Hb_000019_030 Hb_011671_240--Hb_000618_040 Hb_001575_090 Hb_001575_090 Hb_011671_240--Hb_001575_090 Hb_019280_040 Hb_019280_040 Hb_011671_240--Hb_019280_040 Hb_000579_140 Hb_000579_140 Hb_032208_090--Hb_000579_140 Hb_003092_040 Hb_003092_040 Hb_032208_090--Hb_003092_040 Hb_011344_210 Hb_011344_210 Hb_032208_090--Hb_011344_210 Hb_032208_090--Hb_000618_040 Hb_000749_220 Hb_000749_220 Hb_003177_030--Hb_000749_220 Hb_005144_160 Hb_005144_160 Hb_003177_030--Hb_005144_160 Hb_000676_250 Hb_000676_250 Hb_003177_030--Hb_000676_250 Hb_001159_130 Hb_001159_130 Hb_003177_030--Hb_001159_130 Hb_003177_030--Hb_000019_030 Hb_001633_050 Hb_001633_050 Hb_000777_040--Hb_001633_050 Hb_000985_030 Hb_000985_030 Hb_000777_040--Hb_000985_030 Hb_005779_060 Hb_005779_060 Hb_000777_040--Hb_005779_060 Hb_000206_210 Hb_000206_210 Hb_000777_040--Hb_000206_210 Hb_058999_020 Hb_058999_020 Hb_000777_040--Hb_058999_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.9179 11.3005 23.1903 22.5162 33.4605 29.6862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.835 27.1478 41.0061 15.9814 14.6784

CAGE analysis