Hb_004907_110

Information

Type -
Description -
Location Contig4907: 153641-158985
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20670g
description POPTRDRAFT_1092013; hypothetical protein
nr
ID XP_012088616.1
description PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
swissprot
ID O22286
description BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana GN=BPM3 PE=1 SV=1
trembl
ID A0A067LKM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01389 PE=4 SV=1
Gene Ontology
ID GO:0005829
description btb poz and math domain-containing protein 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45300: 153708-158926
cDNA
(Sanger)
(ID:Location)		 007_F12.ab1: 153802-154596 , 043_B05.ab1: 153802-154569

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004907_110 0.0 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
2 Hb_000805_020 0.059578292 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
3 Hb_007532_030 0.0621706204 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
4 Hb_008725_260 0.0670783611 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
5 Hb_031527_040 0.0675967873 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
6 Hb_000876_070 0.0687918444 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
7 Hb_002631_060 0.0695469713 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
8 Hb_001892_020 0.0697537584 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
9 Hb_003464_060 0.0703472548 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
10 Hb_003058_190 0.070972007 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
11 Hb_003376_350 0.0716556994 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
12 Hb_010128_080 0.0745078847 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
13 Hb_005618_170 0.0747390769 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
14 Hb_007416_320 0.0755811905 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002026_180 0.0756010958 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
16 Hb_000866_220 0.0756033458 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
17 Hb_000203_160 0.07564462 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
18 Hb_000030_300 0.0758701651 - - Thioredoxin, putative [Ricinus communis]
19 Hb_002110_150 0.0772067826 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
20 Hb_000189_560 0.0772364872 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004907_110 Hb_004907_110 Hb_000805_020 Hb_000805_020 Hb_004907_110--Hb_000805_020 Hb_007532_030 Hb_007532_030 Hb_004907_110--Hb_007532_030 Hb_008725_260 Hb_008725_260 Hb_004907_110--Hb_008725_260 Hb_031527_040 Hb_031527_040 Hb_004907_110--Hb_031527_040 Hb_000876_070 Hb_000876_070 Hb_004907_110--Hb_000876_070 Hb_002631_060 Hb_002631_060 Hb_004907_110--Hb_002631_060 Hb_002026_180 Hb_002026_180 Hb_000805_020--Hb_002026_180 Hb_007441_230 Hb_007441_230 Hb_000805_020--Hb_007441_230 Hb_007416_320 Hb_007416_320 Hb_000805_020--Hb_007416_320 Hb_007441_200 Hb_007441_200 Hb_000805_020--Hb_007441_200 Hb_010883_090 Hb_010883_090 Hb_000805_020--Hb_010883_090 Hb_009178_030 Hb_009178_030 Hb_007532_030--Hb_009178_030 Hb_002218_010 Hb_002218_010 Hb_007532_030--Hb_002218_010 Hb_007532_030--Hb_008725_260 Hb_007508_090 Hb_007508_090 Hb_007532_030--Hb_007508_090 Hb_000189_560 Hb_000189_560 Hb_007532_030--Hb_000189_560 Hb_002110_150 Hb_002110_150 Hb_008725_260--Hb_002110_150 Hb_002046_180 Hb_002046_180 Hb_008725_260--Hb_002046_180 Hb_000866_220 Hb_000866_220 Hb_008725_260--Hb_000866_220 Hb_008725_260--Hb_009178_030 Hb_008725_260--Hb_000876_070 Hb_001242_060 Hb_001242_060 Hb_031527_040--Hb_001242_060 Hb_000563_320 Hb_000563_320 Hb_031527_040--Hb_000563_320 Hb_000016_250 Hb_000016_250 Hb_031527_040--Hb_000016_250 Hb_007416_180 Hb_007416_180 Hb_031527_040--Hb_007416_180 Hb_000099_080 Hb_000099_080 Hb_031527_040--Hb_000099_080 Hb_001157_040 Hb_001157_040 Hb_031527_040--Hb_001157_040 Hb_002739_100 Hb_002739_100 Hb_000876_070--Hb_002739_100 Hb_005779_060 Hb_005779_060 Hb_000876_070--Hb_005779_060 Hb_000876_070--Hb_002046_180 Hb_032202_190 Hb_032202_190 Hb_000876_070--Hb_032202_190 Hb_007691_030 Hb_007691_030 Hb_000876_070--Hb_007691_030 Hb_005618_170 Hb_005618_170 Hb_000876_070--Hb_005618_170 Hb_002631_060--Hb_010883_090 Hb_003376_350 Hb_003376_350 Hb_002631_060--Hb_003376_350 Hb_002631_060--Hb_007416_320 Hb_000260_270 Hb_000260_270 Hb_002631_060--Hb_000260_270 Hb_000395_190 Hb_000395_190 Hb_002631_060--Hb_000395_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.7927 44.4076 19.5542 24.9428 39.9452 45.808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.0884 53.8726 71.6725 34.8608 20.826

CAGE analysis