Hb_004907_130

Information

Type -
Description -
Location Contig4907: 163183-164757
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004907_130 0.0 - - -
2 Hb_007245_090 0.1474862068 - - -
3 Hb_000934_030 0.1478104591 - - -
4 Hb_000809_050 0.1589203576 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639663 isoform X2 [Jatropha curcas]
5 Hb_000014_100 0.1601734538 - - -
6 Hb_001349_010 0.1680156943 - - -
7 Hb_004650_070 0.1689814297 - - -
8 Hb_000072_280 0.1702361821 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Jatropha curcas]
9 Hb_005214_110 0.1716205496 - - -
10 Hb_000363_010 0.1731673815 - - -
11 Hb_004882_020 0.1770876899 - - -
12 Hb_001437_240 0.1823294439 - - -
13 Hb_163950_010 0.1826947121 - - -
14 Hb_000085_310 0.1834592681 - - hypothetical protein JCGZ_00974 [Jatropha curcas]
15 Hb_002897_060 0.1874812249 - - PREDICTED: uncharacterized protein LOC105649233 [Jatropha curcas]
16 Hb_019973_030 0.1880881617 - - -
17 Hb_002392_040 0.1891618059 - - conserved hypothetical protein [Ricinus communis]
18 Hb_030982_040 0.1899309602 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
19 Hb_001220_040 0.1915884134 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
20 Hb_000304_020 0.1933089463 - - beta-1,3-glucanase form RRII Gln 3 [Hevea brasiliensis]

Gene co-expression network

sample Hb_004907_130 Hb_004907_130 Hb_007245_090 Hb_007245_090 Hb_004907_130--Hb_007245_090 Hb_000934_030 Hb_000934_030 Hb_004907_130--Hb_000934_030 Hb_000809_050 Hb_000809_050 Hb_004907_130--Hb_000809_050 Hb_000014_100 Hb_000014_100 Hb_004907_130--Hb_000014_100 Hb_001349_010 Hb_001349_010 Hb_004907_130--Hb_001349_010 Hb_004650_070 Hb_004650_070 Hb_004907_130--Hb_004650_070 Hb_007245_090--Hb_000014_100 Hb_005214_110 Hb_005214_110 Hb_007245_090--Hb_005214_110 Hb_001930_070 Hb_001930_070 Hb_007245_090--Hb_001930_070 Hb_006499_010 Hb_006499_010 Hb_007245_090--Hb_006499_010 Hb_004882_020 Hb_004882_020 Hb_007245_090--Hb_004882_020 Hb_000339_070 Hb_000339_070 Hb_007245_090--Hb_000339_070 Hb_000934_030--Hb_001349_010 Hb_042729_010 Hb_042729_010 Hb_000934_030--Hb_042729_010 Hb_000363_010 Hb_000363_010 Hb_000934_030--Hb_000363_010 Hb_000934_030--Hb_004882_020 Hb_002936_050 Hb_002936_050 Hb_000934_030--Hb_002936_050 Hb_005618_040 Hb_005618_040 Hb_000934_030--Hb_005618_040 Hb_000809_050--Hb_004650_070 Hb_000304_020 Hb_000304_020 Hb_000809_050--Hb_000304_020 Hb_000072_280 Hb_000072_280 Hb_000809_050--Hb_000072_280 Hb_001366_220 Hb_001366_220 Hb_000809_050--Hb_001366_220 Hb_030982_040 Hb_030982_040 Hb_000809_050--Hb_030982_040 Hb_000085_310 Hb_000085_310 Hb_000809_050--Hb_000085_310 Hb_000014_100--Hb_006499_010 Hb_000014_100--Hb_001930_070 Hb_003747_240 Hb_003747_240 Hb_000014_100--Hb_003747_240 Hb_011716_040 Hb_011716_040 Hb_000014_100--Hb_011716_040 Hb_001158_030 Hb_001158_030 Hb_000014_100--Hb_001158_030 Hb_001198_030 Hb_001198_030 Hb_001349_010--Hb_001198_030 Hb_000733_030 Hb_000733_030 Hb_001349_010--Hb_000733_030 Hb_001349_010--Hb_042729_010 Hb_025087_010 Hb_025087_010 Hb_001349_010--Hb_025087_010 Hb_001722_040 Hb_001722_040 Hb_001349_010--Hb_001722_040 Hb_004650_070--Hb_000085_310 Hb_004650_070--Hb_000733_030 Hb_005955_020 Hb_005955_020 Hb_004650_070--Hb_005955_020 Hb_002662_100 Hb_002662_100 Hb_004650_070--Hb_002662_100 Hb_028872_050 Hb_028872_050 Hb_004650_070--Hb_028872_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.468822 0.203216 0.0753248 0 1.20538 0.289214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.22289 0.698879 1.05893 0.251808 0

CAGE analysis