Hb_004908_010

Information

Type -
Description -
Location Contig4908: 2912-3739
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012088177.1
description PREDICTED: uncharacterized protein LOC105646856 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004908_010 0.0 - - PREDICTED: uncharacterized protein LOC105646856 [Jatropha curcas]
2 Hb_031862_280 0.0674175799 - - hypothetical protein VITISV_012289 [Vitis vinifera]
3 Hb_002595_020 0.0818730373 - - PREDICTED: class I heat shock protein, partial [Nicotiana sylvestris]
4 Hb_170935_010 0.0947460909 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 [Setaria italica]
5 Hb_000608_070 0.1010681964 - - -
6 Hb_089610_010 0.1413424376 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
7 Hb_004246_010 0.1571373345 - - -
8 Hb_165085_010 0.2094157646 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
9 Hb_142295_010 0.2129796919 - - -
10 Hb_092416_010 0.218932213 - - PREDICTED: uncharacterized protein LOC105638802 [Jatropha curcas]
11 Hb_002686_370 0.2194149951 - - PREDICTED: uncharacterized protein LOC102628436 [Citrus sinensis]
12 Hb_000463_110 0.2196413816 - - -
13 Hb_002260_230 0.2275574913 - - hypothetical protein SORBIDRAFT_05g006180 [Sorghum bicolor]
14 Hb_001998_040 0.2280627104 - - ATP binding protein, putative [Ricinus communis]
15 Hb_002641_150 0.2291179866 - - PREDICTED: stachyose synthase-like [Citrus sinensis]
16 Hb_001792_010 0.2298669645 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
17 Hb_001410_100 0.2525429188 - - hypothetical protein EUGRSUZ_B00966 [Eucalyptus grandis]
18 Hb_000589_430 0.2525613755 - - hypothetical protein JCGZ_01402 [Jatropha curcas]
19 Hb_000483_170 0.2646871208 transcription factor TF Family: NAC PREDICTED: protein FEZ [Jatropha curcas]
20 Hb_037960_010 0.2857170587 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_004908_010 Hb_004908_010 Hb_031862_280 Hb_031862_280 Hb_004908_010--Hb_031862_280 Hb_002595_020 Hb_002595_020 Hb_004908_010--Hb_002595_020 Hb_170935_010 Hb_170935_010 Hb_004908_010--Hb_170935_010 Hb_000608_070 Hb_000608_070 Hb_004908_010--Hb_000608_070 Hb_089610_010 Hb_089610_010 Hb_004908_010--Hb_089610_010 Hb_004246_010 Hb_004246_010 Hb_004908_010--Hb_004246_010 Hb_031862_280--Hb_002595_020 Hb_031862_280--Hb_089610_010 Hb_031862_280--Hb_170935_010 Hb_031862_280--Hb_000608_070 Hb_031862_280--Hb_004246_010 Hb_002595_020--Hb_089610_010 Hb_002595_020--Hb_170935_010 Hb_002595_020--Hb_000608_070 Hb_001410_100 Hb_001410_100 Hb_002595_020--Hb_001410_100 Hb_170935_010--Hb_000608_070 Hb_170935_010--Hb_089610_010 Hb_170935_010--Hb_004246_010 Hb_000608_070--Hb_004246_010 Hb_165085_010 Hb_165085_010 Hb_000608_070--Hb_165085_010 Hb_142295_010 Hb_142295_010 Hb_000608_070--Hb_142295_010 Hb_092416_010 Hb_092416_010 Hb_000608_070--Hb_092416_010 Hb_002686_370 Hb_002686_370 Hb_000608_070--Hb_002686_370 Hb_017987_010 Hb_017987_010 Hb_089610_010--Hb_017987_010 Hb_011316_130 Hb_011316_130 Hb_089610_010--Hb_011316_130 Hb_004246_010--Hb_165085_010 Hb_004246_010--Hb_142295_010 Hb_004246_010--Hb_092416_010 Hb_004246_010--Hb_002686_370 Hb_000463_110 Hb_000463_110 Hb_004246_010--Hb_000463_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0247886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0615072 0

CAGE analysis