Hb_004912_030

Information

Type transcription factor
Description TF Family: Jumonji
Location Contig4912: 18196-28053
Sequence    

Annotation

kegg
ID rcu:RCOM_0903610
description hypothetical protein
nr
ID XP_012092360.1
description PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
swissprot
ID Q9SSE9
description Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana GN=JMJ25 PE=1 SV=1
trembl
ID B9RXG4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0903610 PE=4 SV=1
Gene Ontology
ID GO:0008270
description lysine-specific demethylase jmj25-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45304: 18904-19517 , PASA_asmbl_45305: 20951-21386 , PASA_asmbl_45306: 19569-24921 , PASA_asmbl_45307: 19884-20117 , PASA_asmbl_45309: 24959-25148 , PASA_asmbl_45311: 25176-27850 , PASA_asmbl_45312: 25176-27850
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004912_030 0.0 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
2 Hb_000130_420 0.055935863 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
3 Hb_001005_030 0.0626303158 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
4 Hb_002092_080 0.0657321125 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Jatropha curcas]
5 Hb_000243_210 0.0702776686 - - protein with unknown function [Ricinus communis]
6 Hb_000362_170 0.0723526772 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
7 Hb_053079_020 0.0723725142 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
8 Hb_000139_260 0.0732050852 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
9 Hb_001619_150 0.0749250066 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 isoform X1 [Jatropha curcas]
10 Hb_000922_020 0.0750238601 - - protein binding protein, putative [Ricinus communis]
11 Hb_000214_050 0.0762763753 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
12 Hb_001821_160 0.0770291696 - - serine/arginine rich splicing factor, putative [Ricinus communis]
13 Hb_055235_020 0.0776968566 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
14 Hb_002014_040 0.0782118879 - - site-1 protease, putative [Ricinus communis]
15 Hb_001077_030 0.0784415809 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
16 Hb_000855_020 0.078785884 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
17 Hb_001635_040 0.0788925548 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
18 Hb_138596_010 0.0791252134 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
19 Hb_000866_460 0.0793439196 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like [Jatropha curcas]
20 Hb_034432_030 0.079528907 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004912_030 Hb_004912_030 Hb_000130_420 Hb_000130_420 Hb_004912_030--Hb_000130_420 Hb_001005_030 Hb_001005_030 Hb_004912_030--Hb_001005_030 Hb_002092_080 Hb_002092_080 Hb_004912_030--Hb_002092_080 Hb_000243_210 Hb_000243_210 Hb_004912_030--Hb_000243_210 Hb_000362_170 Hb_000362_170 Hb_004912_030--Hb_000362_170 Hb_053079_020 Hb_053079_020 Hb_004912_030--Hb_053079_020 Hb_000130_420--Hb_000362_170 Hb_000635_040 Hb_000635_040 Hb_000130_420--Hb_000635_040 Hb_011972_020 Hb_011972_020 Hb_000130_420--Hb_011972_020 Hb_002014_040 Hb_002014_040 Hb_000130_420--Hb_002014_040 Hb_000238_040 Hb_000238_040 Hb_000130_420--Hb_000238_040 Hb_001005_030--Hb_000362_170 Hb_000373_080 Hb_000373_080 Hb_001005_030--Hb_000373_080 Hb_001269_230 Hb_001269_230 Hb_001005_030--Hb_001269_230 Hb_001635_040 Hb_001635_040 Hb_001005_030--Hb_001635_040 Hb_003186_020 Hb_003186_020 Hb_001005_030--Hb_003186_020 Hb_002092_080--Hb_001005_030 Hb_001619_150 Hb_001619_150 Hb_002092_080--Hb_001619_150 Hb_001077_030 Hb_001077_030 Hb_002092_080--Hb_001077_030 Hb_000139_260 Hb_000139_260 Hb_002092_080--Hb_000139_260 Hb_004785_100 Hb_004785_100 Hb_002092_080--Hb_004785_100 Hb_001318_070 Hb_001318_070 Hb_000243_210--Hb_001318_070 Hb_000099_040 Hb_000099_040 Hb_000243_210--Hb_000099_040 Hb_000174_060 Hb_000174_060 Hb_000243_210--Hb_000174_060 Hb_000671_070 Hb_000671_070 Hb_000243_210--Hb_000671_070 Hb_002205_250 Hb_002205_250 Hb_000243_210--Hb_002205_250 Hb_000879_040 Hb_000879_040 Hb_000243_210--Hb_000879_040 Hb_005895_010 Hb_005895_010 Hb_000362_170--Hb_005895_010 Hb_000362_170--Hb_002014_040 Hb_001002_060 Hb_001002_060 Hb_000362_170--Hb_001002_060 Hb_000214_050 Hb_000214_050 Hb_000362_170--Hb_000214_050 Hb_000362_170--Hb_000373_080 Hb_000115_280 Hb_000115_280 Hb_053079_020--Hb_000115_280 Hb_053079_020--Hb_000214_050 Hb_017151_010 Hb_017151_010 Hb_053079_020--Hb_017151_010 Hb_053079_020--Hb_003186_020 Hb_008247_020 Hb_008247_020 Hb_053079_020--Hb_008247_020 Hb_053079_020--Hb_000243_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.92113 8.86865 10.0427 7.95396 11.2311 7.05171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.62522 4.9533 5.85156 5.39448 8.13394

CAGE analysis