Hb_004916_010

Information

Type -
Description -
Location Contig4916: 18360-21285
Sequence    

Annotation

kegg
ID tcc:TCM_039467
description C-terminal, putative
nr
ID XP_012068474.1
description PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KY22
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03241 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45314: 18395-21292
cDNA
(Sanger)
(ID:Location)		 005_F02.ab1: 18395-19910 , 012_F23.ab1: 18395-19811 , 019_M08.ab1: 18395-19879 , 035_O10.ab1: 18395-19873 , 038_I16.ab1: 18395-19851 , 052_L06.ab1: 18395-19850

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004916_010 0.0 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
2 Hb_002818_030 0.0412475588 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
3 Hb_003849_110 0.0560276377 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
4 Hb_000029_060 0.058565077 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
5 Hb_002234_090 0.0618294767 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
6 Hb_000015_170 0.0644974281 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001716_020 0.0666626325 - - hydrolase, putative [Ricinus communis]
8 Hb_022256_020 0.0668051724 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Jatropha curcas]
9 Hb_002798_070 0.068181336 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
10 Hb_000347_400 0.0682680754 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
11 Hb_000028_130 0.0689966335 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
12 Hb_019863_070 0.069602324 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
13 Hb_003906_200 0.0703099449 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
14 Hb_000025_730 0.0720601682 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
15 Hb_000172_430 0.0727181271 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003494_020 0.072723852 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
17 Hb_003464_090 0.073281759 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
18 Hb_000484_130 0.0751914316 - - splicing factor, putative [Ricinus communis]
19 Hb_005725_210 0.075237946 - - PREDICTED: RNA-binding protein 1 [Jatropha curcas]
20 Hb_002675_130 0.0756135221 - - PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004916_010 Hb_004916_010 Hb_002818_030 Hb_002818_030 Hb_004916_010--Hb_002818_030 Hb_003849_110 Hb_003849_110 Hb_004916_010--Hb_003849_110 Hb_000029_060 Hb_000029_060 Hb_004916_010--Hb_000029_060 Hb_002234_090 Hb_002234_090 Hb_004916_010--Hb_002234_090 Hb_000015_170 Hb_000015_170 Hb_004916_010--Hb_000015_170 Hb_001716_020 Hb_001716_020 Hb_004916_010--Hb_001716_020 Hb_019863_070 Hb_019863_070 Hb_002818_030--Hb_019863_070 Hb_002818_030--Hb_003849_110 Hb_000049_260 Hb_000049_260 Hb_002818_030--Hb_000049_260 Hb_002798_070 Hb_002798_070 Hb_002818_030--Hb_002798_070 Hb_000069_310 Hb_000069_310 Hb_002818_030--Hb_000069_310 Hb_003464_090 Hb_003464_090 Hb_003849_110--Hb_003464_090 Hb_003428_010 Hb_003428_010 Hb_003849_110--Hb_003428_010 Hb_003849_110--Hb_019863_070 Hb_003849_110--Hb_000029_060 Hb_000029_060--Hb_001716_020 Hb_002110_080 Hb_002110_080 Hb_000029_060--Hb_002110_080 Hb_000086_420 Hb_000086_420 Hb_000029_060--Hb_000086_420 Hb_000327_140 Hb_000327_140 Hb_000029_060--Hb_000327_140 Hb_010712_050 Hb_010712_050 Hb_002234_090--Hb_010712_050 Hb_002675_130 Hb_002675_130 Hb_002234_090--Hb_002675_130 Hb_003835_070 Hb_003835_070 Hb_002234_090--Hb_003835_070 Hb_003768_050 Hb_003768_050 Hb_002234_090--Hb_003768_050 Hb_003544_060 Hb_003544_060 Hb_002234_090--Hb_003544_060 Hb_000120_130 Hb_000120_130 Hb_000015_170--Hb_000120_130 Hb_006275_020 Hb_006275_020 Hb_000015_170--Hb_006275_020 Hb_002157_080 Hb_002157_080 Hb_000015_170--Hb_002157_080 Hb_000061_030 Hb_000061_030 Hb_000015_170--Hb_000061_030 Hb_000025_730 Hb_000025_730 Hb_000015_170--Hb_000025_730 Hb_002492_010 Hb_002492_010 Hb_001716_020--Hb_002492_010 Hb_001481_060 Hb_001481_060 Hb_001716_020--Hb_001481_060 Hb_105105_010 Hb_105105_010 Hb_001716_020--Hb_105105_010 Hb_002205_250 Hb_002205_250 Hb_001716_020--Hb_002205_250 Hb_000028_130 Hb_000028_130 Hb_001716_020--Hb_000028_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.4872 44.0839 24.3021 25.0928 16.7826 22.7519
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0326 26.813 30.9968 23.8868 26.2671

CAGE analysis