Hb_004916_020

Information

Type -
Description -
Location Contig4916: 32452-65833
Sequence    

Annotation

kegg
ID vvi:100258105
description DNA ligase 4
nr
ID XP_012068473.1
description PREDICTED: DNA ligase 4 [Jatropha curcas]
swissprot
ID Q9LL84
description DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 SV=1
trembl
ID A0A067KY67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03237 PE=4 SV=1
Gene Ontology
ID GO:0016874
description dna ligase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45316: 33004-36618 , PASA_asmbl_45317: 39325-40182 , PASA_asmbl_45320: 62456-65522
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004916_020 0.0 - - PREDICTED: DNA ligase 4 [Jatropha curcas]
2 Hb_000648_080 0.0744776879 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
3 Hb_000398_020 0.0863339415 - - PREDICTED: superkiller viralicidic activity 2-like 2 isoform X1 [Jatropha curcas]
4 Hb_001541_250 0.0873118204 - - PREDICTED: integrator complex subunit 9 homolog isoform X1 [Jatropha curcas]
5 Hb_012565_050 0.0904179927 - - PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Jatropha curcas]
6 Hb_003666_020 0.0934568879 - - kinase, putative [Ricinus communis]
7 Hb_000289_040 0.0944693475 - - Poly(A) polymerase alpha, putative [Ricinus communis]
8 Hb_002876_130 0.0956719132 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
9 Hb_001638_160 0.0963409912 - - PREDICTED: uncharacterized protein LOC105642785 [Jatropha curcas]
10 Hb_002374_290 0.0970685692 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X1 [Jatropha curcas]
11 Hb_140049_040 0.0986220147 - - PREDICTED: uncharacterized protein LOC105632012 [Jatropha curcas]
12 Hb_004976_010 0.1012348786 - - hypothetical protein RCOM_1429110 [Ricinus communis]
13 Hb_001277_020 0.1014917197 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
14 Hb_026980_020 0.10332667 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
15 Hb_000862_040 0.1040009115 - - ara4-interacting protein, putative [Ricinus communis]
16 Hb_001668_010 0.1040729643 - - PREDICTED: RNA-binding protein with multiple splicing [Jatropha curcas]
17 Hb_000175_100 0.1043299147 - - protein kinase, putative [Ricinus communis]
18 Hb_000358_230 0.1044545377 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
19 Hb_000915_060 0.1050237261 - - PREDICTED: uncharacterized protein LOC105628864 [Jatropha curcas]
20 Hb_002542_130 0.1056497764 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]

Gene co-expression network

sample Hb_004916_020 Hb_004916_020 Hb_000648_080 Hb_000648_080 Hb_004916_020--Hb_000648_080 Hb_000398_020 Hb_000398_020 Hb_004916_020--Hb_000398_020 Hb_001541_250 Hb_001541_250 Hb_004916_020--Hb_001541_250 Hb_012565_050 Hb_012565_050 Hb_004916_020--Hb_012565_050 Hb_003666_020 Hb_003666_020 Hb_004916_020--Hb_003666_020 Hb_000289_040 Hb_000289_040 Hb_004916_020--Hb_000289_040 Hb_000648_080--Hb_000398_020 Hb_140049_040 Hb_140049_040 Hb_000648_080--Hb_140049_040 Hb_000640_310 Hb_000640_310 Hb_000648_080--Hb_000640_310 Hb_002890_120 Hb_002890_120 Hb_000648_080--Hb_002890_120 Hb_000406_230 Hb_000406_230 Hb_000648_080--Hb_000406_230 Hb_000264_030 Hb_000264_030 Hb_000648_080--Hb_000264_030 Hb_007558_070 Hb_007558_070 Hb_000398_020--Hb_007558_070 Hb_000398_020--Hb_000406_230 Hb_002000_070 Hb_002000_070 Hb_000398_020--Hb_002000_070 Hb_000236_400 Hb_000236_400 Hb_000398_020--Hb_000236_400 Hb_004976_010 Hb_004976_010 Hb_000398_020--Hb_004976_010 Hb_007054_040 Hb_007054_040 Hb_001541_250--Hb_007054_040 Hb_001862_110 Hb_001862_110 Hb_001541_250--Hb_001862_110 Hb_001935_140 Hb_001935_140 Hb_001541_250--Hb_001935_140 Hb_002374_290 Hb_002374_290 Hb_001541_250--Hb_002374_290 Hb_009028_010 Hb_009028_010 Hb_001541_250--Hb_009028_010 Hb_000809_170 Hb_000809_170 Hb_001541_250--Hb_000809_170 Hb_012565_050--Hb_004976_010 Hb_000340_030 Hb_000340_030 Hb_012565_050--Hb_000340_030 Hb_000809_160 Hb_000809_160 Hb_012565_050--Hb_000809_160 Hb_002542_130 Hb_002542_130 Hb_012565_050--Hb_002542_130 Hb_002701_150 Hb_002701_150 Hb_012565_050--Hb_002701_150 Hb_004032_230 Hb_004032_230 Hb_012565_050--Hb_004032_230 Hb_004553_030 Hb_004553_030 Hb_003666_020--Hb_004553_030 Hb_000928_220 Hb_000928_220 Hb_003666_020--Hb_000928_220 Hb_000402_080 Hb_000402_080 Hb_003666_020--Hb_000402_080 Hb_001258_020 Hb_001258_020 Hb_003666_020--Hb_001258_020 Hb_008103_060 Hb_008103_060 Hb_003666_020--Hb_008103_060 Hb_001205_200 Hb_001205_200 Hb_003666_020--Hb_001205_200 Hb_002876_130 Hb_002876_130 Hb_000289_040--Hb_002876_130 Hb_000289_040--Hb_140049_040 Hb_014361_070 Hb_014361_070 Hb_000289_040--Hb_014361_070 Hb_000679_310 Hb_000679_310 Hb_000289_040--Hb_000679_310 Hb_001104_160 Hb_001104_160 Hb_000289_040--Hb_001104_160 Hb_000614_210 Hb_000614_210 Hb_000289_040--Hb_000614_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.1726 8.64339 4.56611 3.82384 6.60077 4.18168
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.41001 5.12552 1.60729 4.31329 3.43881

CAGE analysis