Hb_004917_020

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig4917: 16780-17914
Sequence    

Annotation

kegg
ID pop:POPTR_0001s24540g
description POPTRDRAFT_839326; hypothetical protein
nr
ID XP_011000263.1
description PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
swissprot
ID Q9M2U1
description Dof zinc finger protein DOF3.6 OS=Arabidopsis thaliana GN=DOF3.6 PE=1 SV=2
trembl
ID B9GJP7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s24540g PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45326: 16626-17879
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004917_020 0.0 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
2 Hb_002973_050 0.0571751422 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
3 Hb_001279_400 0.0634861898 - - PREDICTED: uncharacterized protein LOC105633544 [Jatropha curcas]
4 Hb_133974_010 0.0778425675 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
5 Hb_002171_050 0.0830040588 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Populus euphratica]
6 Hb_000137_050 0.0883421099 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002835_070 0.0930874058 - - conserved hypothetical protein [Ricinus communis]
8 Hb_133492_010 0.0936523823 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_002388_070 0.0977583028 - - ring finger protein, putative [Ricinus communis]
10 Hb_000813_070 0.0992905174 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000395_310 0.1047369764 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
12 Hb_000449_070 0.1048133715 - - unnamed protein product [Vitis vinifera]
13 Hb_002894_080 0.106370364 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004032_290 0.107304503 - - protein binding protein, putative [Ricinus communis]
15 Hb_000676_230 0.1077461628 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
16 Hb_000000_050 0.1095897254 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001936_120 0.1110657708 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
18 Hb_000856_030 0.1121430635 - - ATP binding protein, putative [Ricinus communis]
19 Hb_004650_120 0.1143499609 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
20 Hb_000368_050 0.1157241579 - - beta-galactosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004917_020 Hb_004917_020 Hb_002973_050 Hb_002973_050 Hb_004917_020--Hb_002973_050 Hb_001279_400 Hb_001279_400 Hb_004917_020--Hb_001279_400 Hb_133974_010 Hb_133974_010 Hb_004917_020--Hb_133974_010 Hb_002171_050 Hb_002171_050 Hb_004917_020--Hb_002171_050 Hb_000137_050 Hb_000137_050 Hb_004917_020--Hb_000137_050 Hb_002835_070 Hb_002835_070 Hb_004917_020--Hb_002835_070 Hb_002973_050--Hb_133974_010 Hb_002973_050--Hb_002835_070 Hb_002973_050--Hb_001279_400 Hb_005711_030 Hb_005711_030 Hb_002973_050--Hb_005711_030 Hb_000813_070 Hb_000813_070 Hb_002973_050--Hb_000813_070 Hb_001279_400--Hb_000813_070 Hb_001279_400--Hb_002171_050 Hb_002894_080 Hb_002894_080 Hb_001279_400--Hb_002894_080 Hb_000000_050 Hb_000000_050 Hb_001279_400--Hb_000000_050 Hb_133974_010--Hb_005711_030 Hb_000676_230 Hb_000676_230 Hb_133974_010--Hb_000676_230 Hb_147006_010 Hb_147006_010 Hb_133974_010--Hb_147006_010 Hb_004032_290 Hb_004032_290 Hb_133974_010--Hb_004032_290 Hb_000449_070 Hb_000449_070 Hb_002171_050--Hb_000449_070 Hb_004625_020 Hb_004625_020 Hb_002171_050--Hb_004625_020 Hb_005614_020 Hb_005614_020 Hb_002171_050--Hb_005614_020 Hb_133492_010 Hb_133492_010 Hb_002171_050--Hb_133492_010 Hb_002499_030 Hb_002499_030 Hb_002171_050--Hb_002499_030 Hb_152914_010 Hb_152914_010 Hb_000137_050--Hb_152914_010 Hb_000856_030 Hb_000856_030 Hb_000137_050--Hb_000856_030 Hb_000197_260 Hb_000197_260 Hb_000137_050--Hb_000197_260 Hb_180980_010 Hb_180980_010 Hb_000137_050--Hb_180980_010 Hb_000317_170 Hb_000317_170 Hb_000137_050--Hb_000317_170 Hb_000023_180 Hb_000023_180 Hb_002835_070--Hb_000023_180 Hb_002835_070--Hb_133974_010 Hb_182869_010 Hb_182869_010 Hb_002835_070--Hb_182869_010 Hb_000000_290 Hb_000000_290 Hb_002835_070--Hb_000000_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0233597 1.33465 1.42082 9.16518 0.0234388 0.140379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.474686 4.55094

CAGE analysis