Hb_004917_040

Information

Type -
Description -
Location Contig4917: 43108-44028
Sequence    

Annotation

kegg
ID pop:POPTR_0009s03470g
description POPTRDRAFT_558090; hypothetical protein
nr
ID XP_002314190.1
description hypothetical protein POPTR_0009s03470g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HPI8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s03470g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004917_040 0.0 - - hypothetical protein POPTR_0009s03470g [Populus trichocarpa]
2 Hb_002248_130 0.1072215272 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
3 Hb_000608_280 0.109174216 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
4 Hb_003540_250 0.1245109494 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
5 Hb_021443_090 0.1258608802 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
6 Hb_005015_080 0.1275228357 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
7 Hb_001376_010 0.129423637 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
8 Hb_000418_010 0.1299199274 - - PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Jatropha curcas]
9 Hb_005288_140 0.131692279 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
10 Hb_002869_050 0.1324473611 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
11 Hb_001246_120 0.1342322082 - - PREDICTED: uncharacterized protein LOC105643270 [Jatropha curcas]
12 Hb_001258_100 0.1360616203 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
13 Hb_033152_090 0.1368448403 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
14 Hb_009393_180 0.137358886 - - PREDICTED: uncharacterized protein LOC101292333 [Fragaria vesca subsp. vesca]
15 Hb_000649_250 0.1387265742 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
16 Hb_006538_130 0.1388638237 - - Uncharacterized protein TCM_009867 [Theobroma cacao]
17 Hb_000523_030 0.1399778402 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
18 Hb_000048_080 0.1400774641 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
19 Hb_001396_070 0.1426505837 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000197_030 0.142872124 - - hypothetical protein RCOM_1447500 [Ricinus communis]

Gene co-expression network

sample Hb_004917_040 Hb_004917_040 Hb_002248_130 Hb_002248_130 Hb_004917_040--Hb_002248_130 Hb_000608_280 Hb_000608_280 Hb_004917_040--Hb_000608_280 Hb_003540_250 Hb_003540_250 Hb_004917_040--Hb_003540_250 Hb_021443_090 Hb_021443_090 Hb_004917_040--Hb_021443_090 Hb_005015_080 Hb_005015_080 Hb_004917_040--Hb_005015_080 Hb_001376_010 Hb_001376_010 Hb_004917_040--Hb_001376_010 Hb_006615_030 Hb_006615_030 Hb_002248_130--Hb_006615_030 Hb_002248_130--Hb_003540_250 Hb_002811_040 Hb_002811_040 Hb_002248_130--Hb_002811_040 Hb_005288_140 Hb_005288_140 Hb_002248_130--Hb_005288_140 Hb_000179_190 Hb_000179_190 Hb_002248_130--Hb_000179_190 Hb_017214_040 Hb_017214_040 Hb_002248_130--Hb_017214_040 Hb_001369_780 Hb_001369_780 Hb_000608_280--Hb_001369_780 Hb_000134_340 Hb_000134_340 Hb_000608_280--Hb_000134_340 Hb_001009_090 Hb_001009_090 Hb_000608_280--Hb_001009_090 Hb_000608_280--Hb_001376_010 Hb_000608_280--Hb_002248_130 Hb_000815_310 Hb_000815_310 Hb_003540_250--Hb_000815_310 Hb_005305_100 Hb_005305_100 Hb_003540_250--Hb_005305_100 Hb_033152_090 Hb_033152_090 Hb_003540_250--Hb_033152_090 Hb_000956_040 Hb_000956_040 Hb_003540_250--Hb_000956_040 Hb_003540_250--Hb_000179_190 Hb_001146_020 Hb_001146_020 Hb_021443_090--Hb_001146_020 Hb_021443_090--Hb_005015_080 Hb_000815_240 Hb_000815_240 Hb_021443_090--Hb_000815_240 Hb_000418_010 Hb_000418_010 Hb_021443_090--Hb_000418_010 Hb_000991_040 Hb_000991_040 Hb_021443_090--Hb_000991_040 Hb_006198_020 Hb_006198_020 Hb_021443_090--Hb_006198_020 Hb_009545_090 Hb_009545_090 Hb_005015_080--Hb_009545_090 Hb_003398_080 Hb_003398_080 Hb_005015_080--Hb_003398_080 Hb_005015_080--Hb_006198_020 Hb_003175_030 Hb_003175_030 Hb_005015_080--Hb_003175_030 Hb_005015_080--Hb_000815_240 Hb_000035_050 Hb_000035_050 Hb_001376_010--Hb_000035_050 Hb_000638_280 Hb_000638_280 Hb_001376_010--Hb_000638_280 Hb_004117_170 Hb_004117_170 Hb_001376_010--Hb_004117_170 Hb_004108_240 Hb_004108_240 Hb_001376_010--Hb_004108_240 Hb_002965_050 Hb_002965_050 Hb_001376_010--Hb_002965_050 Hb_000156_090 Hb_000156_090 Hb_001376_010--Hb_000156_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.2712 83.1738 52.428 62.8364 13.7277 28.726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.9018 17.0621 11.8105 14.3222 31.3618

CAGE analysis