Hb_004920_020

Information

Type -
Description -
Location Contig4920: 16475-19024
Sequence    

Annotation

kegg
ID pop:POPTR_0002s19770g
description POPTRDRAFT_644832; hypothetical protein
nr
ID XP_006375439.1
description hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
swissprot
ID Q3TZ87
description E3 ubiquitin-protein ligase MARCH9 OS=Mus musculus GN=March9 PE=2 SV=1
trembl
ID U5FTE5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s11700g PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring fyve phd zinc finger-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45331: 16468-18954
cDNA
(Sanger)
(ID:Location)		 046_I14.ab1: 16468-18902

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004920_020 0.0 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
2 Hb_000128_040 0.0820740976 - - PREDICTED: uncharacterized protein LOC105641228 isoform X1 [Jatropha curcas]
3 Hb_000950_020 0.0856192126 - - PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
4 Hb_005000_110 0.0902778793 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
5 Hb_000544_070 0.0905718664 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
6 Hb_005211_080 0.0945853316 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
7 Hb_000300_110 0.0961749776 - - hypothetical protein JCGZ_02651 [Jatropha curcas]
8 Hb_000962_090 0.0968371455 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
9 Hb_012807_030 0.0970983238 - - PREDICTED: uncharacterized protein LOC105628042 isoform X1 [Jatropha curcas]
10 Hb_001159_070 0.0984667259 - - DNA photolyase, putative [Ricinus communis]
11 Hb_001014_240 0.1013781446 - - PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
12 Hb_000866_060 0.1069083277 - - putative glycerol-3-phosphate acyltransferase [Vernicia fordii]
13 Hb_015044_010 0.1070176328 - - hypothetical protein JCGZ_25130 [Jatropha curcas]
14 Hb_124677_010 0.1071594425 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002762_050 0.1073351967 - - PREDICTED: uncharacterized protein LOC105640359 [Jatropha curcas]
16 Hb_004994_030 0.1080219875 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
17 Hb_001488_250 0.1090483735 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006970_030 0.1095085584 - - synaptotagmin, putative [Ricinus communis]
19 Hb_004306_090 0.1108347218 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
20 Hb_000359_050 0.1109560788 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004920_020 Hb_004920_020 Hb_000128_040 Hb_000128_040 Hb_004920_020--Hb_000128_040 Hb_000950_020 Hb_000950_020 Hb_004920_020--Hb_000950_020 Hb_005000_110 Hb_005000_110 Hb_004920_020--Hb_005000_110 Hb_000544_070 Hb_000544_070 Hb_004920_020--Hb_000544_070 Hb_005211_080 Hb_005211_080 Hb_004920_020--Hb_005211_080 Hb_000300_110 Hb_000300_110 Hb_004920_020--Hb_000300_110 Hb_001014_240 Hb_001014_240 Hb_000128_040--Hb_001014_240 Hb_015044_010 Hb_015044_010 Hb_000128_040--Hb_015044_010 Hb_101133_030 Hb_101133_030 Hb_000128_040--Hb_101133_030 Hb_000359_050 Hb_000359_050 Hb_000128_040--Hb_000359_050 Hb_023344_090 Hb_023344_090 Hb_000128_040--Hb_023344_090 Hb_006267_040 Hb_006267_040 Hb_000128_040--Hb_006267_040 Hb_006970_030 Hb_006970_030 Hb_000950_020--Hb_006970_030 Hb_000711_030 Hb_000711_030 Hb_000950_020--Hb_000711_030 Hb_002235_070 Hb_002235_070 Hb_000950_020--Hb_002235_070 Hb_001159_070 Hb_001159_070 Hb_000950_020--Hb_001159_070 Hb_000950_020--Hb_000544_070 Hb_001343_030 Hb_001343_030 Hb_005000_110--Hb_001343_030 Hb_007597_030 Hb_007597_030 Hb_005000_110--Hb_007597_030 Hb_000808_130 Hb_000808_130 Hb_005000_110--Hb_000808_130 Hb_000962_090 Hb_000962_090 Hb_005000_110--Hb_000962_090 Hb_005000_110--Hb_023344_090 Hb_001488_250 Hb_001488_250 Hb_005000_110--Hb_001488_250 Hb_004306_090 Hb_004306_090 Hb_000544_070--Hb_004306_090 Hb_002485_050 Hb_002485_050 Hb_000544_070--Hb_002485_050 Hb_002609_140 Hb_002609_140 Hb_000544_070--Hb_002609_140 Hb_007803_040 Hb_007803_040 Hb_000544_070--Hb_007803_040 Hb_074548_010 Hb_074548_010 Hb_000544_070--Hb_074548_010 Hb_005211_080--Hb_000962_090 Hb_005211_080--Hb_000359_050 Hb_001006_150 Hb_001006_150 Hb_005211_080--Hb_001006_150 Hb_005329_010 Hb_005329_010 Hb_005211_080--Hb_005329_010 Hb_005211_080--Hb_004306_090 Hb_001766_160 Hb_001766_160 Hb_005211_080--Hb_001766_160 Hb_127263_010 Hb_127263_010 Hb_000300_110--Hb_127263_010 Hb_000239_050 Hb_000239_050 Hb_000300_110--Hb_000239_050 Hb_029920_010 Hb_029920_010 Hb_000300_110--Hb_029920_010 Hb_007545_070 Hb_007545_070 Hb_000300_110--Hb_007545_070 Hb_000866_060 Hb_000866_060 Hb_000300_110--Hb_000866_060 Hb_000152_350 Hb_000152_350 Hb_000300_110--Hb_000152_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0673432 1.28971 18.524 5.53952 0.102577 0.0632717
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.189709 0.261123 0 1.64809 21.1406

CAGE analysis