Hb_004920_060

Information

Type -
Description -
Location Contig4920: 44690-52576
Sequence    

Annotation

kegg
ID rcu:RCOM_1347190
description hypothetical protein
nr
ID XP_012082890.1
description PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
swissprot
ID Q54KG3
description Vacuolar protein sorting-associated protein 51 homolog OS=Dictyostelium discoideum GN=vps51 PE=3 SV=1
trembl
ID A0A067K7M7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14026 PE=4 SV=1
Gene Ontology
ID GO:0000145
description vacuolar protein sorting-associated protein 51 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45334: 44719-52509
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004920_060 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
2 Hb_078477_040 0.0838302078 - - nuclear movement protein nudc, putative [Ricinus communis]
3 Hb_001731_020 0.0854914333 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
4 Hb_001489_070 0.0869790659 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
5 Hb_008725_130 0.0876371643 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
6 Hb_008246_030 0.0884856332 transcription factor TF Family: C3H tRNA-dihydrouridine synthase, putative [Ricinus communis]
7 Hb_004376_030 0.0891135664 transcription factor TF Family: mTERF hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris]
8 Hb_000120_510 0.0893539616 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
9 Hb_002612_010 0.0900542401 - - hypothetical protein JCGZ_19269 [Jatropha curcas]
10 Hb_003436_050 0.0952981803 - - arf gtpase-activating protein, putative [Ricinus communis]
11 Hb_017895_020 0.0988239522 - - Vacuolar protein sorting protein, putative [Ricinus communis]
12 Hb_005408_020 0.0994826718 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000116_460 0.1005479759 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
14 Hb_006002_030 0.1016856147 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
15 Hb_001473_080 0.1017124087 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
16 Hb_006829_090 0.1022305518 - - PREDICTED: protein MOS2 [Jatropha curcas]
17 Hb_007668_020 0.1065189839 - - PREDICTED: uncharacterized protein LOC105631102 [Jatropha curcas]
18 Hb_001396_290 0.1066713319 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
19 Hb_002307_350 0.1069866569 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
20 Hb_005462_020 0.1071756413 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]

Gene co-expression network

sample Hb_004920_060 Hb_004920_060 Hb_078477_040 Hb_078477_040 Hb_004920_060--Hb_078477_040 Hb_001731_020 Hb_001731_020 Hb_004920_060--Hb_001731_020 Hb_001489_070 Hb_001489_070 Hb_004920_060--Hb_001489_070 Hb_008725_130 Hb_008725_130 Hb_004920_060--Hb_008725_130 Hb_008246_030 Hb_008246_030 Hb_004920_060--Hb_008246_030 Hb_004376_030 Hb_004376_030 Hb_004920_060--Hb_004376_030 Hb_006002_030 Hb_006002_030 Hb_078477_040--Hb_006002_030 Hb_005462_020 Hb_005462_020 Hb_078477_040--Hb_005462_020 Hb_006829_090 Hb_006829_090 Hb_078477_040--Hb_006829_090 Hb_001278_060 Hb_001278_060 Hb_078477_040--Hb_001278_060 Hb_078477_040--Hb_001489_070 Hb_022250_110 Hb_022250_110 Hb_078477_040--Hb_022250_110 Hb_031069_020 Hb_031069_020 Hb_001731_020--Hb_031069_020 Hb_001731_020--Hb_001489_070 Hb_001731_020--Hb_078477_040 Hb_000261_290 Hb_000261_290 Hb_001731_020--Hb_000261_290 Hb_006588_050 Hb_006588_050 Hb_001731_020--Hb_006588_050 Hb_001489_070--Hb_006002_030 Hb_001489_070--Hb_005462_020 Hb_001489_070--Hb_008725_130 Hb_017895_020 Hb_017895_020 Hb_008725_130--Hb_017895_020 Hb_011609_170 Hb_011609_170 Hb_008725_130--Hb_011609_170 Hb_000329_130 Hb_000329_130 Hb_008725_130--Hb_000329_130 Hb_002675_040 Hb_002675_040 Hb_008725_130--Hb_002675_040 Hb_005408_020 Hb_005408_020 Hb_008725_130--Hb_005408_020 Hb_001900_120 Hb_001900_120 Hb_008725_130--Hb_001900_120 Hb_000363_380 Hb_000363_380 Hb_008246_030--Hb_000363_380 Hb_002612_010 Hb_002612_010 Hb_008246_030--Hb_002612_010 Hb_002301_270 Hb_002301_270 Hb_008246_030--Hb_002301_270 Hb_012404_070 Hb_012404_070 Hb_008246_030--Hb_012404_070 Hb_008246_030--Hb_017895_020 Hb_004376_030--Hb_005408_020 Hb_000914_080 Hb_000914_080 Hb_004376_030--Hb_000914_080 Hb_000261_520 Hb_000261_520 Hb_004376_030--Hb_000261_520 Hb_000640_220 Hb_000640_220 Hb_004376_030--Hb_000640_220 Hb_004376_030--Hb_078477_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.9977 22.1474 20.7638 14.8821 56.4802 56.1585
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2551 7.56096 7.75605 12.4217 9.34541

CAGE analysis