Hb_004920_070

Information

Type transcription factor
Description TF Family: bZIP
Location Contig4920: 56990-57433
Sequence    

Annotation

kegg
ID rcu:RCOM_1347180
description Ocs element-binding factor, putative
nr
ID XP_002515285.1
description Ocs element-binding factor, putative [Ricinus communis]
swissprot
ID P24068
description Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2
trembl
ID B9RNE6
description Ocs element-binding factor, putative OS=Ricinus communis GN=RCOM_1347180 PE=4 SV=1
Gene Ontology
ID GO:0003700
description ocs element-binding factor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 051_B23.ab1: 56415-56999

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004920_070 0.0 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
2 Hb_000069_240 0.1582322948 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3-like [Jatropha curcas]
3 Hb_003147_070 0.1701875811 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
4 Hb_000510_230 0.171253008 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
5 Hb_000394_110 0.2009120678 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
6 Hb_002849_140 0.2091878233 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
7 Hb_000529_150 0.2104713714 - - protein with unknown function [Ricinus communis]
8 Hb_000025_370 0.2142177297 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
9 Hb_002671_090 0.2145239538 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
10 Hb_005375_050 0.2149161636 - - inorganic pyrophosphatase, putative [Ricinus communis]
11 Hb_100790_010 0.2155601535 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005194_020 0.2159478931 - - PREDICTED: UPF0553 protein-like isoform X1 [Jatropha curcas]
13 Hb_118282_010 0.2163724047 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
14 Hb_004193_010 0.2172368901 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
15 Hb_004125_060 0.2190387246 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001959_010 0.2196828202 - - myosin XI, putative [Ricinus communis]
17 Hb_127194_010 0.2197024207 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
18 Hb_012545_030 0.2212858613 - - Polyadenylate-binding protein RBP47C [Glycine soja]
19 Hb_000979_060 0.2215254102 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
20 Hb_031822_010 0.2249869667 - - PREDICTED: uncharacterized protein LOC103496015 [Cucumis melo]

Gene co-expression network

sample Hb_004920_070 Hb_004920_070 Hb_000069_240 Hb_000069_240 Hb_004920_070--Hb_000069_240 Hb_003147_070 Hb_003147_070 Hb_004920_070--Hb_003147_070 Hb_000510_230 Hb_000510_230 Hb_004920_070--Hb_000510_230 Hb_000394_110 Hb_000394_110 Hb_004920_070--Hb_000394_110 Hb_002849_140 Hb_002849_140 Hb_004920_070--Hb_002849_140 Hb_000529_150 Hb_000529_150 Hb_004920_070--Hb_000529_150 Hb_012545_030 Hb_012545_030 Hb_000069_240--Hb_012545_030 Hb_003549_130 Hb_003549_130 Hb_000069_240--Hb_003549_130 Hb_008173_060 Hb_008173_060 Hb_000069_240--Hb_008173_060 Hb_000069_240--Hb_000510_230 Hb_000069_240--Hb_003147_070 Hb_031822_010 Hb_031822_010 Hb_003147_070--Hb_031822_010 Hb_003147_070--Hb_012545_030 Hb_080362_010 Hb_080362_010 Hb_003147_070--Hb_080362_010 Hb_000421_230 Hb_000421_230 Hb_003147_070--Hb_000421_230 Hb_003147_070--Hb_000510_230 Hb_004125_060 Hb_004125_060 Hb_003147_070--Hb_004125_060 Hb_000510_230--Hb_000394_110 Hb_000510_230--Hb_000529_150 Hb_008768_020 Hb_008768_020 Hb_000510_230--Hb_008768_020 Hb_127194_010 Hb_127194_010 Hb_000394_110--Hb_127194_010 Hb_000057_140 Hb_000057_140 Hb_000394_110--Hb_000057_140 Hb_001959_010 Hb_001959_010 Hb_000394_110--Hb_001959_010 Hb_007558_020 Hb_007558_020 Hb_000394_110--Hb_007558_020 Hb_098533_020 Hb_098533_020 Hb_000394_110--Hb_098533_020 Hb_128524_020 Hb_128524_020 Hb_002849_140--Hb_128524_020 Hb_000538_030 Hb_000538_030 Hb_002849_140--Hb_000538_030 Hb_001123_200 Hb_001123_200 Hb_002849_140--Hb_001123_200 Hb_004965_050 Hb_004965_050 Hb_002849_140--Hb_004965_050 Hb_006909_060 Hb_006909_060 Hb_002849_140--Hb_006909_060 Hb_002849_140--Hb_000394_110 Hb_000529_150--Hb_031822_010 Hb_000529_150--Hb_000394_110 Hb_000529_150--Hb_003147_070 Hb_002909_020 Hb_002909_020 Hb_000529_150--Hb_002909_020 Hb_118282_010 Hb_118282_010 Hb_000529_150--Hb_118282_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
115.733 364.599 794.922 116.432 32.8329 44.5017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
124.92 347.813 264.759 29.0452 63.2652

CAGE analysis