Hb_004920_080

Information

Type -
Description -
Location Contig4920: 61768-62148
Sequence    

Annotation

kegg
ID pop:POPTR_0014s11580g
description POPTRDRAFT_731703; CP12 domain-containing family protein
nr
ID XP_012082893.1
description PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9LZP9
description Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana GN=CP12-2 PE=1 SV=1
trembl
ID A0A067JWM5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14028 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45336: 61576-62196
cDNA
(Sanger)
(ID:Location)		 012_J18.ab1: 61607-62187 , 017_L16.ab1: 61597-62196

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004920_080 0.0 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
2 Hb_000029_390 0.048299922 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
3 Hb_002995_060 0.0620593328 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
4 Hb_000629_110 0.0730714639 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
5 Hb_010021_040 0.0742527261 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
6 Hb_004712_230 0.0773693299 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]
7 Hb_005736_030 0.0801039589 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
8 Hb_000983_200 0.0844321708 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
9 Hb_001775_010 0.084796743 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011381_120 0.0872566792 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
11 Hb_004631_020 0.0875537657 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
12 Hb_001289_050 0.0894372244 - - hypothetical protein Poptr_cp075 [Populus trichocarpa]
13 Hb_002289_070 0.0900524806 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Jatropha curcas]
14 Hb_001517_060 0.0902520907 - - phosphoribulose kinase, putative [Ricinus communis]
15 Hb_000282_100 0.0913792255 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
16 Hb_009093_020 0.0917250327 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
17 Hb_008864_050 0.0925102792 - - protein binding protein, putative [Ricinus communis]
18 Hb_001951_040 0.0937295642 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
19 Hb_020805_090 0.0941581451 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
20 Hb_002534_090 0.0949017212 - - geranylgeranyl reductase [Hevea brasiliensis]

Gene co-expression network

sample Hb_004920_080 Hb_004920_080 Hb_000029_390 Hb_000029_390 Hb_004920_080--Hb_000029_390 Hb_002995_060 Hb_002995_060 Hb_004920_080--Hb_002995_060 Hb_000629_110 Hb_000629_110 Hb_004920_080--Hb_000629_110 Hb_010021_040 Hb_010021_040 Hb_004920_080--Hb_010021_040 Hb_004712_230 Hb_004712_230 Hb_004920_080--Hb_004712_230 Hb_005736_030 Hb_005736_030 Hb_004920_080--Hb_005736_030 Hb_000029_390--Hb_002995_060 Hb_000282_100 Hb_000282_100 Hb_000029_390--Hb_000282_100 Hb_009093_020 Hb_009093_020 Hb_000029_390--Hb_009093_020 Hb_001517_060 Hb_001517_060 Hb_000029_390--Hb_001517_060 Hb_004631_020 Hb_004631_020 Hb_000029_390--Hb_004631_020 Hb_002995_060--Hb_000629_110 Hb_011381_120 Hb_011381_120 Hb_002995_060--Hb_011381_120 Hb_002995_060--Hb_004712_230 Hb_001671_130 Hb_001671_130 Hb_002995_060--Hb_001671_130 Hb_003093_050 Hb_003093_050 Hb_000629_110--Hb_003093_050 Hb_004818_010 Hb_004818_010 Hb_000629_110--Hb_004818_010 Hb_004143_080 Hb_004143_080 Hb_000629_110--Hb_004143_080 Hb_000704_020 Hb_000704_020 Hb_000629_110--Hb_000704_020 Hb_000983_200 Hb_000983_200 Hb_000629_110--Hb_000983_200 Hb_000629_110--Hb_005736_030 Hb_008864_050 Hb_008864_050 Hb_010021_040--Hb_008864_050 Hb_001775_010 Hb_001775_010 Hb_010021_040--Hb_001775_010 Hb_000768_080 Hb_000768_080 Hb_010021_040--Hb_000768_080 Hb_018202_040 Hb_018202_040 Hb_010021_040--Hb_018202_040 Hb_005194_050 Hb_005194_050 Hb_010021_040--Hb_005194_050 Hb_004712_230--Hb_004631_020 Hb_004712_230--Hb_005736_030 Hb_004712_230--Hb_011381_120 Hb_002818_130 Hb_002818_130 Hb_004712_230--Hb_002818_130 Hb_003653_030 Hb_003653_030 Hb_004712_230--Hb_003653_030 Hb_000029_150 Hb_000029_150 Hb_005736_030--Hb_000029_150 Hb_020805_090 Hb_020805_090 Hb_005736_030--Hb_020805_090 Hb_005736_030--Hb_004631_020 Hb_004807_040 Hb_004807_040 Hb_005736_030--Hb_004807_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 47.855 244.285 166.607 0 0.910911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.4113 2.06642 0.271261 3.65332 1520.68

CAGE analysis