Hb_004920_090

Information

Type -
Description -
Location Contig4920: 74158-79965
Sequence    

Annotation

kegg
ID pop:POPTR_0014s11570g
description POPTRDRAFT_245563; hypothetical protein
nr
ID XP_012082895.1
description PREDICTED: probable glutamyl endopeptidase, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q8VZF3
description Probable glutamyl endopeptidase, chloroplastic OS=Arabidopsis thaliana GN=GEP PE=2 SV=2
trembl
ID A0A067JZR6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14029 PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable glutamyl chloroplastic isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45337: 74111-79723
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004920_090 0.0 - - PREDICTED: probable glutamyl endopeptidase, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_008024_030 0.0470651939 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
3 Hb_001623_480 0.0611125186 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Jatropha curcas]
4 Hb_000679_020 0.0762982171 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
5 Hb_000563_420 0.0769731079 - - PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
6 Hb_000035_170 0.077647386 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Jatropha curcas]
7 Hb_000544_010 0.0789450281 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
8 Hb_089140_050 0.0796611272 - - hypothetical protein JCGZ_07485 [Jatropha curcas]
9 Hb_000740_100 0.0813728547 - - calpain, putative [Ricinus communis]
10 Hb_001191_120 0.0839466627 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
11 Hb_000044_040 0.0842747714 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
12 Hb_012053_080 0.0843024146 - - AP-2 complex subunit alpha, putative [Ricinus communis]
13 Hb_000671_070 0.0852052149 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
14 Hb_001789_040 0.0853104065 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
15 Hb_027380_140 0.0865073506 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
16 Hb_160459_040 0.0874419563 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
17 Hb_000082_070 0.0874988388 - - PREDICTED: phosphatidylinositol 4-kinase alpha 1 [Jatropha curcas]
18 Hb_000864_030 0.0893832992 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
19 Hb_004800_180 0.0921087166 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
20 Hb_001935_110 0.0923183981 - - PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]

Gene co-expression network

sample Hb_004920_090 Hb_004920_090 Hb_008024_030 Hb_008024_030 Hb_004920_090--Hb_008024_030 Hb_001623_480 Hb_001623_480 Hb_004920_090--Hb_001623_480 Hb_000679_020 Hb_000679_020 Hb_004920_090--Hb_000679_020 Hb_000563_420 Hb_000563_420 Hb_004920_090--Hb_000563_420 Hb_000035_170 Hb_000035_170 Hb_004920_090--Hb_000035_170 Hb_000544_010 Hb_000544_010 Hb_004920_090--Hb_000544_010 Hb_027380_140 Hb_027380_140 Hb_008024_030--Hb_027380_140 Hb_008024_030--Hb_001623_480 Hb_000740_100 Hb_000740_100 Hb_008024_030--Hb_000740_100 Hb_000671_070 Hb_000671_070 Hb_008024_030--Hb_000671_070 Hb_012395_140 Hb_012395_140 Hb_008024_030--Hb_012395_140 Hb_000920_210 Hb_000920_210 Hb_001623_480--Hb_000920_210 Hb_001623_480--Hb_000740_100 Hb_000109_100 Hb_000109_100 Hb_001623_480--Hb_000109_100 Hb_104061_020 Hb_104061_020 Hb_001623_480--Hb_104061_020 Hb_000864_030 Hb_000864_030 Hb_000679_020--Hb_000864_030 Hb_000661_030 Hb_000661_030 Hb_000679_020--Hb_000661_030 Hb_000174_170 Hb_000174_170 Hb_000679_020--Hb_000174_170 Hb_000679_020--Hb_000563_420 Hb_000906_100 Hb_000906_100 Hb_000679_020--Hb_000906_100 Hb_000563_420--Hb_000864_030 Hb_004800_180 Hb_004800_180 Hb_000563_420--Hb_004800_180 Hb_055235_020 Hb_055235_020 Hb_000563_420--Hb_055235_020 Hb_000115_280 Hb_000115_280 Hb_000563_420--Hb_000115_280 Hb_000318_120 Hb_000318_120 Hb_000563_420--Hb_000318_120 Hb_007044_110 Hb_007044_110 Hb_000563_420--Hb_007044_110 Hb_006501_090 Hb_006501_090 Hb_000035_170--Hb_006501_090 Hb_012053_080 Hb_012053_080 Hb_000035_170--Hb_012053_080 Hb_000082_070 Hb_000082_070 Hb_000035_170--Hb_000082_070 Hb_003645_060 Hb_003645_060 Hb_000035_170--Hb_003645_060 Hb_000563_130 Hb_000563_130 Hb_000035_170--Hb_000563_130 Hb_001655_030 Hb_001655_030 Hb_000035_170--Hb_001655_030 Hb_000665_160 Hb_000665_160 Hb_000544_010--Hb_000665_160 Hb_000076_130 Hb_000076_130 Hb_000544_010--Hb_000076_130 Hb_034432_030 Hb_034432_030 Hb_000544_010--Hb_034432_030 Hb_006445_010 Hb_006445_010 Hb_000544_010--Hb_006445_010 Hb_001379_110 Hb_001379_110 Hb_000544_010--Hb_001379_110 Hb_002749_110 Hb_002749_110 Hb_000544_010--Hb_002749_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.9921 40.6244 34.5101 25.7655 55.7956 45.108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.6931 13.6745 24.5188 42.5201 52.807

CAGE analysis