Hb_004920_120

Information

Type -
Description -
Location Contig4920: 89406-92249
Sequence    

Annotation

kegg
ID rcu:RCOM_1347130
description hypothetical protein
nr
ID XP_002515280.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LZQ1
description Protein trichome birefringence-like 6 OS=Arabidopsis thaliana GN=TBL6 PE=2 SV=1
trembl
ID B9RNE1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1347130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45341: 87025-88557 , PASA_asmbl_45342: 89696-90060 , PASA_asmbl_45343: 90214-92029
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004920_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001009_170 0.0613282303 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
3 Hb_005490_030 0.0759550671 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
4 Hb_015934_070 0.0762402148 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
5 Hb_061090_010 0.0784079384 - - RAN BINDING protein 1 [Populus trichocarpa]
6 Hb_004218_110 0.0797640608 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
7 Hb_025240_040 0.0815895687 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
8 Hb_001369_690 0.0843642046 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
9 Hb_011671_180 0.0852062903 - - PREDICTED: probable quinone oxidoreductase [Jatropha curcas]
10 Hb_000976_170 0.0866840052 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
11 Hb_007017_030 0.0869237996 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
12 Hb_127552_030 0.0884263769 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
13 Hb_002759_060 0.0914534087 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
14 Hb_108350_010 0.0927491032 - - GTP-binding protein erg, putative [Ricinus communis]
15 Hb_002000_080 0.0927619403 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
16 Hb_002481_080 0.0932890392 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
17 Hb_000291_220 0.0941374396 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105638855 [Jatropha curcas]
18 Hb_000120_460 0.0948783271 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
19 Hb_019654_030 0.0950576808 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
20 Hb_000056_260 0.0954400557 - - hypothetical protein CICLE_v10033822mg [Citrus clementina]

Gene co-expression network

sample Hb_004920_120 Hb_004920_120 Hb_001009_170 Hb_001009_170 Hb_004920_120--Hb_001009_170 Hb_005490_030 Hb_005490_030 Hb_004920_120--Hb_005490_030 Hb_015934_070 Hb_015934_070 Hb_004920_120--Hb_015934_070 Hb_061090_010 Hb_061090_010 Hb_004920_120--Hb_061090_010 Hb_004218_110 Hb_004218_110 Hb_004920_120--Hb_004218_110 Hb_025240_040 Hb_025240_040 Hb_004920_120--Hb_025240_040 Hb_001009_170--Hb_005490_030 Hb_001959_210 Hb_001959_210 Hb_001009_170--Hb_001959_210 Hb_011671_180 Hb_011671_180 Hb_001009_170--Hb_011671_180 Hb_001619_070 Hb_001619_070 Hb_001009_170--Hb_001619_070 Hb_007044_140 Hb_007044_140 Hb_001009_170--Hb_007044_140 Hb_001344_010 Hb_001344_010 Hb_005490_030--Hb_001344_010 Hb_023001_060 Hb_023001_060 Hb_005490_030--Hb_023001_060 Hb_000172_290 Hb_000172_290 Hb_005490_030--Hb_000172_290 Hb_000749_220 Hb_000749_220 Hb_005490_030--Hb_000749_220 Hb_005054_100 Hb_005054_100 Hb_005490_030--Hb_005054_100 Hb_031862_100 Hb_031862_100 Hb_015934_070--Hb_031862_100 Hb_015934_070--Hb_025240_040 Hb_127552_030 Hb_127552_030 Hb_015934_070--Hb_127552_030 Hb_006907_130 Hb_006907_130 Hb_015934_070--Hb_006907_130 Hb_007017_030 Hb_007017_030 Hb_015934_070--Hb_007017_030 Hb_001369_690 Hb_001369_690 Hb_015934_070--Hb_001369_690 Hb_001818_090 Hb_001818_090 Hb_061090_010--Hb_001818_090 Hb_003615_010 Hb_003615_010 Hb_061090_010--Hb_003615_010 Hb_002026_180 Hb_002026_180 Hb_061090_010--Hb_002026_180 Hb_003996_020 Hb_003996_020 Hb_061090_010--Hb_003996_020 Hb_019280_040 Hb_019280_040 Hb_061090_010--Hb_019280_040 Hb_007441_120 Hb_007441_120 Hb_061090_010--Hb_007441_120 Hb_002759_060 Hb_002759_060 Hb_004218_110--Hb_002759_060 Hb_004218_110--Hb_025240_040 Hb_004218_110--Hb_001369_690 Hb_004254_120 Hb_004254_120 Hb_004218_110--Hb_004254_120 Hb_000120_460 Hb_000120_460 Hb_004218_110--Hb_000120_460 Hb_002005_020 Hb_002005_020 Hb_004218_110--Hb_002005_020 Hb_025240_040--Hb_004254_120 Hb_025240_040--Hb_127552_030 Hb_025240_040--Hb_002759_060 Hb_000421_220 Hb_000421_220 Hb_025240_040--Hb_000421_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.0486 2.80526 3.11707 7.02335 6.61721 10.8814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.49862 10.2971 10.7593 11.3342 4.76954

CAGE analysis