Hb_004920_150

Information

Type -
Description -
Location Contig4920: 115851-116684
Sequence    

Annotation

kegg
ID rcu:RCOM_1347000
description hypothetical protein
nr
ID XP_002515277.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RND8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1347000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004920_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002739_140 0.0475412409 - - PREDICTED: protein TPX2 [Jatropha curcas]
3 Hb_004117_230 0.0621746781 - - lipid transfer precursor protein [Hevea brasiliensis]
4 Hb_003972_070 0.0645844978 - - PREDICTED: cytochrome P450 85A1-like [Citrus sinensis]
5 Hb_038927_020 0.0666759083 - - PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]
6 Hb_010488_050 0.0672302499 transcription factor TF Family: LIM hypothetical protein JCGZ_14428 [Jatropha curcas]
7 Hb_000776_090 0.0677978142 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
8 Hb_001014_180 0.0681126816 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
9 Hb_007281_010 0.0690981367 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
10 Hb_002311_010 0.0760597876 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
11 Hb_001080_240 0.0786445009 - - hypothetical protein PHAVU_001G152800g [Phaseolus vulgaris]
12 Hb_001935_060 0.0789805492 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
13 Hb_000193_320 0.0798488175 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001500_090 0.0803106525 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010166_010 0.0817014469 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
16 Hb_000162_010 0.0833329404 - - PREDICTED: dirigent protein 23 [Jatropha curcas]
17 Hb_000416_020 0.0834047291 - - conserved hypothetical protein [Ricinus communis]
18 Hb_050514_030 0.0865752681 - - PREDICTED: protein trichome birefringence-like 34 [Jatropha curcas]
19 Hb_034507_030 0.0876732708 - - PREDICTED: laccase-4-like [Jatropha curcas]
20 Hb_000836_640 0.0950352729 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]

Gene co-expression network

sample Hb_004920_150 Hb_004920_150 Hb_002739_140 Hb_002739_140 Hb_004920_150--Hb_002739_140 Hb_004117_230 Hb_004117_230 Hb_004920_150--Hb_004117_230 Hb_003972_070 Hb_003972_070 Hb_004920_150--Hb_003972_070 Hb_038927_020 Hb_038927_020 Hb_004920_150--Hb_038927_020 Hb_010488_050 Hb_010488_050 Hb_004920_150--Hb_010488_050 Hb_000776_090 Hb_000776_090 Hb_004920_150--Hb_000776_090 Hb_002739_140--Hb_000776_090 Hb_002739_140--Hb_003972_070 Hb_002739_140--Hb_038927_020 Hb_002739_140--Hb_010488_050 Hb_050514_030 Hb_050514_030 Hb_002739_140--Hb_050514_030 Hb_034507_030 Hb_034507_030 Hb_004117_230--Hb_034507_030 Hb_001014_180 Hb_001014_180 Hb_004117_230--Hb_001014_180 Hb_006483_020 Hb_006483_020 Hb_004117_230--Hb_006483_020 Hb_007281_010 Hb_007281_010 Hb_004117_230--Hb_007281_010 Hb_000462_040 Hb_000462_040 Hb_004117_230--Hb_000462_040 Hb_003972_070--Hb_001014_180 Hb_002311_010 Hb_002311_010 Hb_003972_070--Hb_002311_010 Hb_003972_070--Hb_007281_010 Hb_003972_070--Hb_038927_020 Hb_038927_020--Hb_002311_010 Hb_000416_020 Hb_000416_020 Hb_038927_020--Hb_000416_020 Hb_001935_060 Hb_001935_060 Hb_038927_020--Hb_001935_060 Hb_038927_020--Hb_007281_010 Hb_001377_220 Hb_001377_220 Hb_038927_020--Hb_001377_220 Hb_010488_050--Hb_050514_030 Hb_112765_010 Hb_112765_010 Hb_010488_050--Hb_112765_010 Hb_000162_010 Hb_000162_010 Hb_010488_050--Hb_000162_010 Hb_010488_050--Hb_003972_070 Hb_000836_640 Hb_000836_640 Hb_000776_090--Hb_000836_640 Hb_005523_030 Hb_005523_030 Hb_000776_090--Hb_005523_030 Hb_000086_490 Hb_000086_490 Hb_000776_090--Hb_000086_490 Hb_000776_090--Hb_050514_030 Hb_000776_090--Hb_000162_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0555843 0.78845 1.13632 33.4601 0.0260649 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.426398 29.0577

CAGE analysis