Hb_004924_020

Information

Type -
Description -
Location Contig4924: 16197-23925
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9LV48
description Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=2 SV=1
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45354: 15434-23672
cDNA
(Sanger)
(ID:Location)		 011_P06.ab1: 20949-22925

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004924_020 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_008963_010 0.0688997267 desease resistance Gene Name: LRR_4 PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
3 Hb_116103_010 0.0879428471 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
4 Hb_000904_110 0.0932179726 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Eucalyptus grandis]
5 Hb_173029_010 0.102612086 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000668_220 0.1046055135 - - PREDICTED: uncharacterized protein LOC105119281 [Populus euphratica]
7 Hb_091826_020 0.1053535011 - - hypothetical protein JCGZ_04975 [Jatropha curcas]
8 Hb_004241_190 0.1057860087 - - -
9 Hb_158110_010 0.1063418394 - - hypothetical protein CICLE_v10012017mg [Citrus clementina]
10 Hb_000628_050 0.1145483294 - - nucleic acid binding protein, putative [Ricinus communis]
11 Hb_064885_010 0.116535073 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
12 Hb_004724_310 0.1167625543 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
13 Hb_000714_080 0.1178684387 transcription factor TF Family: Trihelix GT-2 factor [Glycine max]
14 Hb_000996_100 0.1186352357 - - Nucleotide binding, putative [Theobroma cacao]
15 Hb_000373_220 0.1188079421 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
16 Hb_053935_010 0.1193165471 - - hypothetical protein EUGRSUZ_G02294 [Eucalyptus grandis]
17 Hb_000061_060 0.1258654333 transcription factor TF Family: MYB-related transcription factor MYB28 [Arabidopsis thaliana]
18 Hb_029622_090 0.1290493478 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 2-like [Jatropha curcas]
19 Hb_002849_010 0.131878191 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
20 Hb_128460_020 0.1319444706 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_004924_020 Hb_004924_020 Hb_008963_010 Hb_008963_010 Hb_004924_020--Hb_008963_010 Hb_116103_010 Hb_116103_010 Hb_004924_020--Hb_116103_010 Hb_000904_110 Hb_000904_110 Hb_004924_020--Hb_000904_110 Hb_173029_010 Hb_173029_010 Hb_004924_020--Hb_173029_010 Hb_000668_220 Hb_000668_220 Hb_004924_020--Hb_000668_220 Hb_091826_020 Hb_091826_020 Hb_004924_020--Hb_091826_020 Hb_004724_310 Hb_004724_310 Hb_008963_010--Hb_004724_310 Hb_000714_080 Hb_000714_080 Hb_008963_010--Hb_000714_080 Hb_008963_010--Hb_091826_020 Hb_000996_100 Hb_000996_100 Hb_008963_010--Hb_000996_100 Hb_158110_010 Hb_158110_010 Hb_008963_010--Hb_158110_010 Hb_116103_010--Hb_000904_110 Hb_064885_010 Hb_064885_010 Hb_116103_010--Hb_064885_010 Hb_002849_010 Hb_002849_010 Hb_116103_010--Hb_002849_010 Hb_116103_010--Hb_173029_010 Hb_116103_010--Hb_000668_220 Hb_000904_110--Hb_064885_010 Hb_000904_110--Hb_173029_010 Hb_000904_110--Hb_002849_010 Hb_000904_110--Hb_000668_220 Hb_173029_010--Hb_000668_220 Hb_004241_190 Hb_004241_190 Hb_173029_010--Hb_004241_190 Hb_000628_050 Hb_000628_050 Hb_173029_010--Hb_000628_050 Hb_000373_220 Hb_000373_220 Hb_173029_010--Hb_000373_220 Hb_053935_010 Hb_053935_010 Hb_173029_010--Hb_053935_010 Hb_000668_220--Hb_004241_190 Hb_000668_220--Hb_000373_220 Hb_000668_220--Hb_053935_010 Hb_001511_200 Hb_001511_200 Hb_000668_220--Hb_001511_200 Hb_000668_220--Hb_000628_050 Hb_000665_090 Hb_000665_090 Hb_091826_020--Hb_000665_090 Hb_091826_020--Hb_000714_080 Hb_091826_020--Hb_116103_010 Hb_091826_020--Hb_000904_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0297744 12.1176 9.714 11.4131 0.0371648 0.0173711
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.367159 0.225046

CAGE analysis