Hb_004924_030

Information

Type -
Description -
Location Contig4924: 42943-44716
Sequence    

Annotation

kegg
ID atr:s00052p00149280
description AMTR_s00052p00149280; hypothetical protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID M0UWR1
description Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1
Gene Ontology
ID GO:0004672
description proline-rich receptor-like protein kinase perk1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004924_030 0.0 - - -
2 Hb_039650_030 0.0881776178 - - hypothetical protein RCOM_2128750 [Ricinus communis]
3 Hb_000175_250 0.1166010097 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
4 Hb_005545_080 0.1423139113 - - hypothetical protein JCGZ_01293 [Jatropha curcas]
5 Hb_000059_160 0.1438816368 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
6 Hb_000465_100 0.1467331439 - - catalytic, putative [Ricinus communis]
7 Hb_006873_030 0.1506912701 - - receptor serine/threonine kinase, putative [Ricinus communis]
8 Hb_028841_020 0.1513401414 - - hypothetical protein CISIN_1g041345mg [Citrus sinensis]
9 Hb_000247_150 0.1532351938 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
10 Hb_001004_010 0.1562529429 - - conserved hypothetical protein [Ricinus communis]
11 Hb_035677_010 0.1623195573 - - conserved hypothetical protein [Ricinus communis]
12 Hb_012496_010 0.165250517 - - kinase, putative [Ricinus communis]
13 Hb_003811_030 0.1654511901 - - hypothetical protein JCGZ_01307 [Jatropha curcas]
14 Hb_091913_010 0.1655967693 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
15 Hb_002973_040 0.1711468701 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
16 Hb_000331_710 0.1758514356 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
17 Hb_007328_010 0.1759294336 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
18 Hb_077995_010 0.1780115222 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
19 Hb_164146_010 0.1787408196 - - -
20 Hb_001568_060 0.178754263 - - PREDICTED: uncharacterized protein LOC105650728 [Jatropha curcas]

Gene co-expression network

sample Hb_004924_030 Hb_004924_030 Hb_039650_030 Hb_039650_030 Hb_004924_030--Hb_039650_030 Hb_000175_250 Hb_000175_250 Hb_004924_030--Hb_000175_250 Hb_005545_080 Hb_005545_080 Hb_004924_030--Hb_005545_080 Hb_000059_160 Hb_000059_160 Hb_004924_030--Hb_000059_160 Hb_000465_100 Hb_000465_100 Hb_004924_030--Hb_000465_100 Hb_006873_030 Hb_006873_030 Hb_004924_030--Hb_006873_030 Hb_039650_030--Hb_000175_250 Hb_000247_150 Hb_000247_150 Hb_039650_030--Hb_000247_150 Hb_039650_030--Hb_006873_030 Hb_035677_010 Hb_035677_010 Hb_039650_030--Hb_035677_010 Hb_007328_010 Hb_007328_010 Hb_039650_030--Hb_007328_010 Hb_028841_020 Hb_028841_020 Hb_000175_250--Hb_028841_020 Hb_000175_250--Hb_007328_010 Hb_012496_010 Hb_012496_010 Hb_000175_250--Hb_012496_010 Hb_141990_050 Hb_141990_050 Hb_000175_250--Hb_141990_050 Hb_004712_140 Hb_004712_140 Hb_005545_080--Hb_004712_140 Hb_000117_110 Hb_000117_110 Hb_005545_080--Hb_000117_110 Hb_000297_100 Hb_000297_100 Hb_005545_080--Hb_000297_100 Hb_010327_010 Hb_010327_010 Hb_005545_080--Hb_010327_010 Hb_001677_130 Hb_001677_130 Hb_005545_080--Hb_001677_130 Hb_007858_030 Hb_007858_030 Hb_000059_160--Hb_007858_030 Hb_091913_010 Hb_091913_010 Hb_000059_160--Hb_091913_010 Hb_000059_160--Hb_039650_030 Hb_008897_020 Hb_008897_020 Hb_000059_160--Hb_008897_020 Hb_000059_160--Hb_000175_250 Hb_077995_010 Hb_077995_010 Hb_000465_100--Hb_077995_010 Hb_001247_010 Hb_001247_010 Hb_000465_100--Hb_001247_010 Hb_006907_020 Hb_006907_020 Hb_000465_100--Hb_006907_020 Hb_001345_030 Hb_001345_030 Hb_000465_100--Hb_001345_030 Hb_000465_100--Hb_000247_150 Hb_003811_030 Hb_003811_030 Hb_006873_030--Hb_003811_030 Hb_006873_030--Hb_012496_010 Hb_113396_020 Hb_113396_020 Hb_006873_030--Hb_113396_020 Hb_006873_030--Hb_035677_010 Hb_006873_030--Hb_000247_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.00911 1.58218 0.201794 0 0.0872436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.231837 0.915929

CAGE analysis