Hb_004925_030

Information

Type -
Description -
Location Contig4925: 54491-55501
Sequence    

Annotation

kegg
ID tcc:TCM_029396
description EXORDIUM like 1
nr
ID XP_007024942.1
description EXORDIUM like 1 [Theobroma cacao]
swissprot
ID O82176
description Protein EXORDIUM-like 7 OS=Arabidopsis thaliana GN=EXL7 PE=2 SV=2
trembl
ID A0A061GKF8
description EXORDIUM like 1 OS=Theobroma cacao GN=TCM_029396 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45356: 55152-55638
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004925_030 0.0 - - EXORDIUM like 1 [Theobroma cacao]
2 Hb_000302_110 0.0693189878 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_000521_070 0.137223288 - - PREDICTED: uncharacterized protein LOC105650323 [Jatropha curcas]
4 Hb_007741_090 0.1722893896 - - Autophagy-related 8f -like protein [Gossypium arboreum]
5 Hb_002582_080 0.1784856012 - - -
6 Hb_156850_040 0.1790250665 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
7 Hb_000236_210 0.1831106467 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
8 Hb_007575_090 0.1872252616 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
9 Hb_009010_040 0.1972054549 - - Peptide transporter, putative [Ricinus communis]
10 Hb_009111_060 0.1988316981 - - PREDICTED: sodium transporter HKT1-like [Jatropha curcas]
11 Hb_001296_010 0.2026106515 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000302_100 0.2026488418 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
13 Hb_002164_010 0.2044302296 - - Stellacyanin, putative [Ricinus communis]
14 Hb_002030_190 0.2058030212 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000206_270 0.2059587425 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
16 Hb_003536_090 0.2073469 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
17 Hb_002277_020 0.2086107984 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
18 Hb_020831_060 0.2087004117 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
19 Hb_001246_080 0.2095647843 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
20 Hb_002894_070 0.2110754358 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein B [Jatropha curcas]

Gene co-expression network

sample Hb_004925_030 Hb_004925_030 Hb_000302_110 Hb_000302_110 Hb_004925_030--Hb_000302_110 Hb_000521_070 Hb_000521_070 Hb_004925_030--Hb_000521_070 Hb_007741_090 Hb_007741_090 Hb_004925_030--Hb_007741_090 Hb_002582_080 Hb_002582_080 Hb_004925_030--Hb_002582_080 Hb_156850_040 Hb_156850_040 Hb_004925_030--Hb_156850_040 Hb_000236_210 Hb_000236_210 Hb_004925_030--Hb_000236_210 Hb_000302_110--Hb_000521_070 Hb_000302_110--Hb_002582_080 Hb_007575_090 Hb_007575_090 Hb_000302_110--Hb_007575_090 Hb_000302_110--Hb_007741_090 Hb_000302_110--Hb_156850_040 Hb_000521_070--Hb_007741_090 Hb_000521_070--Hb_007575_090 Hb_002030_190 Hb_002030_190 Hb_000521_070--Hb_002030_190 Hb_000206_270 Hb_000206_270 Hb_000521_070--Hb_000206_270 Hb_007741_090--Hb_007575_090 Hb_184541_010 Hb_184541_010 Hb_007741_090--Hb_184541_010 Hb_011918_010 Hb_011918_010 Hb_007741_090--Hb_011918_010 Hb_000302_100 Hb_000302_100 Hb_002582_080--Hb_000302_100 Hb_002582_080--Hb_011918_010 Hb_034299_070 Hb_034299_070 Hb_002582_080--Hb_034299_070 Hb_001329_020 Hb_001329_020 Hb_002582_080--Hb_001329_020 Hb_001322_010 Hb_001322_010 Hb_156850_040--Hb_001322_010 Hb_000860_030 Hb_000860_030 Hb_156850_040--Hb_000860_030 Hb_000638_110 Hb_000638_110 Hb_156850_040--Hb_000638_110 Hb_022597_010 Hb_022597_010 Hb_156850_040--Hb_022597_010 Hb_002277_020 Hb_002277_020 Hb_156850_040--Hb_002277_020 Hb_003582_010 Hb_003582_010 Hb_156850_040--Hb_003582_010 Hb_003464_100 Hb_003464_100 Hb_000236_210--Hb_003464_100 Hb_000635_020 Hb_000635_020 Hb_000236_210--Hb_000635_020 Hb_020831_060 Hb_020831_060 Hb_000236_210--Hb_020831_060 Hb_003893_060 Hb_003893_060 Hb_000236_210--Hb_003893_060 Hb_019299_020 Hb_019299_020 Hb_000236_210--Hb_019299_020 Hb_000220_020 Hb_000220_020 Hb_000236_210--Hb_000220_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.813238 1.86453 1.25971 28.6773 0.806319 0.620059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.299948 0.353865 0.796649 1.72302 0.482991

CAGE analysis