Hb_004926_010

Information

Type -
Description -
Location Contig4926: 3-224
Sequence    

Annotation

kegg
ID tcc:TCM_025526
description Leucine-rich repeat containing protein, putative
nr
ID KDP43110.1
description hypothetical protein JCGZ_27059 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LF20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27059 PE=4 SV=1
Gene Ontology
ID GO:0043531
description lrr and nb-arc domains-containing disease resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004926_010 0.0 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
2 Hb_000194_030 0.0668501805 transcription factor TF Family: NAC NAC transcription factor 059 [Jatropha curcas]
3 Hb_159012_010 0.0681952087 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 [Jatropha curcas]
4 Hb_000480_050 0.0720286097 - - hypothetical protein PHAVU_004G154200g [Phaseolus vulgaris]
5 Hb_004031_060 0.0838483422 - - hypothetical protein B456_007G3219002, partial [Gossypium raimondii]
6 Hb_002999_010 0.0985059913 - - PREDICTED: extracellular ribonuclease LE-like [Vitis vinifera]
7 Hb_007426_100 0.1106074472 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004319_100 0.1114512473 - - PREDICTED: gibberellin-regulated protein 14 isoform X3 [Jatropha curcas]
9 Hb_001091_040 0.1115645593 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
10 Hb_016120_030 0.111773216 - - hypothetical protein EUGRSUZ_D00080 [Eucalyptus grandis]
11 Hb_001529_010 0.1123163599 - - -
12 Hb_039946_040 0.1124979554 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
13 Hb_007477_020 0.1147518232 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
14 Hb_005373_030 0.1192402525 - - conserved hypothetical protein [Ricinus communis]
15 Hb_033153_030 0.1230028437 - - PREDICTED: uncharacterized protein LOC105650145 [Jatropha curcas]
16 Hb_003058_090 0.1282000127 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
17 Hb_066207_020 0.1316774933 - - hypothetical protein JCGZ_22048 [Jatropha curcas]
18 Hb_002874_100 0.1378047953 - - cytochrome P450, putative [Ricinus communis]
19 Hb_006351_040 0.1405666711 - - conserved hypothetical protein [Ricinus communis]
20 Hb_059226_020 0.1431504458 - - hypothetical protein B456_008G287700 [Gossypium raimondii]

Gene co-expression network

sample Hb_004926_010 Hb_004926_010 Hb_000194_030 Hb_000194_030 Hb_004926_010--Hb_000194_030 Hb_159012_010 Hb_159012_010 Hb_004926_010--Hb_159012_010 Hb_000480_050 Hb_000480_050 Hb_004926_010--Hb_000480_050 Hb_004031_060 Hb_004031_060 Hb_004926_010--Hb_004031_060 Hb_002999_010 Hb_002999_010 Hb_004926_010--Hb_002999_010 Hb_007426_100 Hb_007426_100 Hb_004926_010--Hb_007426_100 Hb_000194_030--Hb_159012_010 Hb_004319_100 Hb_004319_100 Hb_000194_030--Hb_004319_100 Hb_000194_030--Hb_007426_100 Hb_001529_010 Hb_001529_010 Hb_000194_030--Hb_001529_010 Hb_000194_030--Hb_000480_050 Hb_159012_010--Hb_000480_050 Hb_159012_010--Hb_004319_100 Hb_159012_010--Hb_001529_010 Hb_007477_020 Hb_007477_020 Hb_159012_010--Hb_007477_020 Hb_000480_050--Hb_002999_010 Hb_000480_050--Hb_007477_020 Hb_000480_050--Hb_004031_060 Hb_016120_030 Hb_016120_030 Hb_004031_060--Hb_016120_030 Hb_004031_060--Hb_002999_010 Hb_019053_050 Hb_019053_050 Hb_004031_060--Hb_019053_050 Hb_001091_040 Hb_001091_040 Hb_004031_060--Hb_001091_040 Hb_005373_030 Hb_005373_030 Hb_002999_010--Hb_005373_030 Hb_002999_010--Hb_016120_030 Hb_002999_010--Hb_007477_020 Hb_002874_100 Hb_002874_100 Hb_007426_100--Hb_002874_100 Hb_033153_030 Hb_033153_030 Hb_007426_100--Hb_033153_030 Hb_000445_480 Hb_000445_480 Hb_007426_100--Hb_000445_480 Hb_007426_100--Hb_001529_010 Hb_002894_020 Hb_002894_020 Hb_007426_100--Hb_002894_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 14.0585 15.527 333.197 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 38.4476 2.7905

CAGE analysis