Hb_004931_070

Information

Type -
Description -
Location Contig4931: 80335-84775
Sequence    

Annotation

kegg
ID rcu:RCOM_1214100
description hypothetical protein
nr
ID XP_012085324.1
description PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
swissprot
ID Q9SJX7
description Protein root UVB sensitive 2, chloroplastic OS=Arabidopsis thaliana GN=RUS2 PE=1 SV=2
trembl
ID A0A067JUM8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17696 PE=4 SV=1
Gene Ontology
ID GO:0005739
description protein root uvb sensitive chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45364: 80212-81927 , PASA_asmbl_45365: 81936-84800
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004931_070 0.0 - - PREDICTED: protein root UVB sensitive 2, chloroplastic [Jatropha curcas]
2 Hb_000465_460 0.0620960966 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
3 Hb_003125_200 0.0697932004 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
4 Hb_012389_020 0.0761181285 - - hypothetical protein POPTR_0006s05190g [Populus trichocarpa]
5 Hb_000421_070 0.077623892 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_000317_240 0.0814932498 - - PREDICTED: protein DYAD [Jatropha curcas]
7 Hb_002530_030 0.0836484511 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
8 Hb_000096_070 0.0842034539 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
9 Hb_000275_170 0.0844218983 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
10 Hb_000041_270 0.0852395431 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
11 Hb_002603_120 0.0853183504 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
12 Hb_004310_150 0.0856663007 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
13 Hb_004032_430 0.0859467528 - - PREDICTED: uncharacterized protein LOC105635169 [Jatropha curcas]
14 Hb_001758_100 0.0860674744 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
15 Hb_001430_120 0.0874351024 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
16 Hb_000181_110 0.0881469932 - - PREDICTED: uncharacterized protein LOC105637521 [Jatropha curcas]
17 Hb_003929_250 0.0883194368 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
18 Hb_005694_110 0.0893736713 - - hypothetical protein PRUPE_ppa008137mg [Prunus persica]
19 Hb_001157_040 0.0895417472 - - casein kinase, putative [Ricinus communis]
20 Hb_000016_250 0.0916379576 - - unnamed protein product [Malassezia sympodialis ATCC 42132]

Gene co-expression network

sample Hb_004931_070 Hb_004931_070 Hb_000465_460 Hb_000465_460 Hb_004931_070--Hb_000465_460 Hb_003125_200 Hb_003125_200 Hb_004931_070--Hb_003125_200 Hb_012389_020 Hb_012389_020 Hb_004931_070--Hb_012389_020 Hb_000421_070 Hb_000421_070 Hb_004931_070--Hb_000421_070 Hb_000317_240 Hb_000317_240 Hb_004931_070--Hb_000317_240 Hb_002530_030 Hb_002530_030 Hb_004931_070--Hb_002530_030 Hb_058999_020 Hb_058999_020 Hb_000465_460--Hb_058999_020 Hb_000465_460--Hb_000317_240 Hb_001242_060 Hb_001242_060 Hb_000465_460--Hb_001242_060 Hb_001758_100 Hb_001758_100 Hb_000465_460--Hb_001758_100 Hb_001157_040 Hb_001157_040 Hb_000465_460--Hb_001157_040 Hb_003125_200--Hb_000465_460 Hb_003125_200--Hb_001758_100 Hb_003125_200--Hb_012389_020 Hb_027472_040 Hb_027472_040 Hb_003125_200--Hb_027472_040 Hb_029388_020 Hb_029388_020 Hb_003125_200--Hb_029388_020 Hb_002192_080 Hb_002192_080 Hb_012389_020--Hb_002192_080 Hb_004586_140 Hb_004586_140 Hb_012389_020--Hb_004586_140 Hb_000302_270 Hb_000302_270 Hb_012389_020--Hb_000302_270 Hb_000853_430 Hb_000853_430 Hb_012389_020--Hb_000853_430 Hb_002603_120 Hb_002603_120 Hb_000421_070--Hb_002603_120 Hb_005188_050 Hb_005188_050 Hb_000421_070--Hb_005188_050 Hb_000663_040 Hb_000663_040 Hb_000421_070--Hb_000663_040 Hb_001677_210 Hb_001677_210 Hb_000421_070--Hb_001677_210 Hb_004491_010 Hb_004491_010 Hb_000421_070--Hb_004491_010 Hb_000317_240--Hb_002530_030 Hb_000757_060 Hb_000757_060 Hb_000317_240--Hb_000757_060 Hb_000768_090 Hb_000768_090 Hb_000317_240--Hb_000768_090 Hb_000317_240--Hb_058999_020 Hb_000504_140 Hb_000504_140 Hb_000317_240--Hb_000504_140 Hb_120410_010 Hb_120410_010 Hb_002530_030--Hb_120410_010 Hb_001305_010 Hb_001305_010 Hb_002530_030--Hb_001305_010 Hb_000016_250 Hb_000016_250 Hb_002530_030--Hb_000016_250 Hb_004310_150 Hb_004310_150 Hb_002530_030--Hb_004310_150 Hb_011995_010 Hb_011995_010 Hb_002530_030--Hb_011995_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.023 3.81339 2.81412 1.51521 3.84737 4.71865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.15786 5.5367 3.29369 2.84157 1.23917

CAGE analysis