Hb_004931_080

Information

Type transcription factor
Description TF Family: C2H2
Location Contig4931: 87732-88712
Sequence    

Annotation

kegg
ID rcu:RCOM_0722880
description hypothetical protein
nr
ID XP_012074142.1
description PREDICTED: zinc finger protein ZAT5-like [Jatropha curcas]
swissprot
ID Q9SLD4
description Zinc finger protein ZAT11 OS=Arabidopsis thaliana GN=ZAT11 PE=2 SV=1
trembl
ID A0A067KMV5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09528 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004931_080 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Jatropha curcas]
2 Hb_000959_310 0.209684922 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
3 Hb_002301_360 0.24006551 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
4 Hb_001140_070 0.2410037945 - - Chromosome transmission fidelity protein 8, putative isoform 2 [Theobroma cacao]
5 Hb_009780_080 0.2678267548 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
6 Hb_006970_080 0.273571107 - - PREDICTED: putative lysine-specific demethylase JMJD5 [Jatropha curcas]
7 Hb_000510_330 0.2736954662 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
8 Hb_000326_050 0.280818582 - - Phenylalanyl-tRNA synthetase alpha chain isoform 2 [Theobroma cacao]
9 Hb_001799_110 0.2827215508 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X2 [Jatropha curcas]
10 Hb_000046_490 0.2828913347 - - PREDICTED: uncharacterized protein LOC105646185 [Jatropha curcas]
11 Hb_114336_030 0.2838879994 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
12 Hb_000230_480 0.2846077062 - - PREDICTED: endo-1,3;1,4-beta-D-glucanase-like [Jatropha curcas]
13 Hb_012120_030 0.2847710279 - - -
14 Hb_177215_040 0.2851831874 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
15 Hb_009393_190 0.2852782647 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]
16 Hb_000029_090 0.2863161257 - - Nicalin precursor, putative [Ricinus communis]
17 Hb_027792_010 0.2876128519 - - -
18 Hb_010712_080 0.2902247132 - - hypothetical protein AALP_AA5G019400 [Arabis alpina]
19 Hb_182424_030 0.2908980715 - - PREDICTED: conserved oligomeric Golgi complex subunit 8 [Vitis vinifera]
20 Hb_001021_180 0.2913532452 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_004931_080 Hb_004931_080 Hb_000959_310 Hb_000959_310 Hb_004931_080--Hb_000959_310 Hb_002301_360 Hb_002301_360 Hb_004931_080--Hb_002301_360 Hb_001140_070 Hb_001140_070 Hb_004931_080--Hb_001140_070 Hb_009780_080 Hb_009780_080 Hb_004931_080--Hb_009780_080 Hb_006970_080 Hb_006970_080 Hb_004931_080--Hb_006970_080 Hb_000510_330 Hb_000510_330 Hb_004931_080--Hb_000510_330 Hb_001799_110 Hb_001799_110 Hb_000959_310--Hb_001799_110 Hb_012120_030 Hb_012120_030 Hb_000959_310--Hb_012120_030 Hb_114336_030 Hb_114336_030 Hb_000959_310--Hb_114336_030 Hb_188209_010 Hb_188209_010 Hb_000959_310--Hb_188209_010 Hb_003750_070 Hb_003750_070 Hb_000959_310--Hb_003750_070 Hb_000109_240 Hb_000109_240 Hb_002301_360--Hb_000109_240 Hb_001865_080 Hb_001865_080 Hb_002301_360--Hb_001865_080 Hb_004734_040 Hb_004734_040 Hb_002301_360--Hb_004734_040 Hb_000903_060 Hb_000903_060 Hb_002301_360--Hb_000903_060 Hb_000923_090 Hb_000923_090 Hb_002301_360--Hb_000923_090 Hb_001476_060 Hb_001476_060 Hb_002301_360--Hb_001476_060 Hb_182424_030 Hb_182424_030 Hb_001140_070--Hb_182424_030 Hb_001396_210 Hb_001396_210 Hb_001140_070--Hb_001396_210 Hb_002027_390 Hb_002027_390 Hb_001140_070--Hb_002027_390 Hb_009615_020 Hb_009615_020 Hb_001140_070--Hb_009615_020 Hb_039021_010 Hb_039021_010 Hb_001140_070--Hb_039021_010 Hb_000345_510 Hb_000345_510 Hb_001140_070--Hb_000345_510 Hb_132998_020 Hb_132998_020 Hb_009780_080--Hb_132998_020 Hb_001507_100 Hb_001507_100 Hb_009780_080--Hb_001507_100 Hb_008983_010 Hb_008983_010 Hb_009780_080--Hb_008983_010 Hb_079268_010 Hb_079268_010 Hb_009780_080--Hb_079268_010 Hb_089497_010 Hb_089497_010 Hb_009780_080--Hb_089497_010 Hb_138585_110 Hb_138585_110 Hb_009780_080--Hb_138585_110 Hb_000331_180 Hb_000331_180 Hb_006970_080--Hb_000331_180 Hb_048937_060 Hb_048937_060 Hb_006970_080--Hb_048937_060 Hb_000525_020 Hb_000525_020 Hb_006970_080--Hb_000525_020 Hb_002236_050 Hb_002236_050 Hb_006970_080--Hb_002236_050 Hb_001369_300 Hb_001369_300 Hb_006970_080--Hb_001369_300 Hb_006970_080--Hb_004734_040 Hb_002820_110 Hb_002820_110 Hb_000510_330--Hb_002820_110 Hb_000286_070 Hb_000286_070 Hb_000510_330--Hb_000286_070 Hb_000000_360 Hb_000000_360 Hb_000510_330--Hb_000000_360 Hb_000107_190 Hb_000107_190 Hb_000510_330--Hb_000107_190 Hb_017002_020 Hb_017002_020 Hb_000510_330--Hb_017002_020 Hb_002876_240 Hb_002876_240 Hb_000510_330--Hb_002876_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.136004 0.0909443 0.418116 0.112779 0.0652005 0.205805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.467139 0.163287 0 0.328482 0

CAGE analysis