Hb_004931_090

Information

Type -
Description -
Location Contig4931: 89140-93719
Sequence    

Annotation

kegg
ID pvu:PHAVU_007G193100g
description hypothetical protein
nr
ID XP_012085326.1
description PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Jatropha curcas]
swissprot
ID Q5ZIX3
description Chromatin modification-related protein MEAF6 OS=Gallus gallus GN=MEAF6 PE=2 SV=1
trembl
ID A0A067K404
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17697 PE=4 SV=1
Gene Ontology
ID GO:0005773
description chromatin modification-related protein meaf6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45366: 89343-93664
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004931_090 0.0 - - PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Jatropha curcas]
2 Hb_000510_110 0.0671482014 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
3 Hb_004657_050 0.069208228 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
4 Hb_165132_010 0.0701381435 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
5 Hb_004934_110 0.0730917517 transcription factor TF Family: HMG hypothetical protein B456_002G115100 [Gossypium raimondii]
6 Hb_002686_020 0.0731818195 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
7 Hb_001540_010 0.0739112449 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
8 Hb_000840_030 0.075241128 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
9 Hb_002007_060 0.0761390645 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
10 Hb_002518_050 0.0768098309 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
11 Hb_003050_080 0.0781453002 - - 40S ribosomal protein S14, putative [Ricinus communis]
12 Hb_112798_030 0.0788640012 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008878_030 0.0792585984 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
14 Hb_000331_080 0.0796613543 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
15 Hb_002874_190 0.0797434024 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
16 Hb_000608_370 0.080785208 - - acyl-carrier-protein [Triadica sebifera]
17 Hb_000270_270 0.0816100729 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
18 Hb_000029_200 0.0820899232 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
19 Hb_000167_140 0.0830281703 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
20 Hb_007416_030 0.0847865312 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]

Gene co-expression network

sample Hb_004931_090 Hb_004931_090 Hb_000510_110 Hb_000510_110 Hb_004931_090--Hb_000510_110 Hb_004657_050 Hb_004657_050 Hb_004931_090--Hb_004657_050 Hb_165132_010 Hb_165132_010 Hb_004931_090--Hb_165132_010 Hb_004934_110 Hb_004934_110 Hb_004931_090--Hb_004934_110 Hb_002686_020 Hb_002686_020 Hb_004931_090--Hb_002686_020 Hb_001540_010 Hb_001540_010 Hb_004931_090--Hb_001540_010 Hb_002518_050 Hb_002518_050 Hb_000510_110--Hb_002518_050 Hb_000029_200 Hb_000029_200 Hb_000510_110--Hb_000029_200 Hb_001300_040 Hb_001300_040 Hb_000510_110--Hb_001300_040 Hb_012573_070 Hb_012573_070 Hb_000510_110--Hb_012573_070 Hb_003683_110 Hb_003683_110 Hb_000510_110--Hb_003683_110 Hb_023226_040 Hb_023226_040 Hb_004657_050--Hb_023226_040 Hb_028995_040 Hb_028995_040 Hb_004657_050--Hb_028995_040 Hb_011224_110 Hb_011224_110 Hb_004657_050--Hb_011224_110 Hb_002007_060 Hb_002007_060 Hb_004657_050--Hb_002007_060 Hb_000866_270 Hb_000866_270 Hb_004657_050--Hb_000866_270 Hb_134949_020 Hb_134949_020 Hb_165132_010--Hb_134949_020 Hb_001662_070 Hb_001662_070 Hb_165132_010--Hb_001662_070 Hb_002874_190 Hb_002874_190 Hb_165132_010--Hb_002874_190 Hb_033594_110 Hb_033594_110 Hb_165132_010--Hb_033594_110 Hb_165132_010--Hb_002518_050 Hb_002864_050 Hb_002864_050 Hb_165132_010--Hb_002864_050 Hb_000251_070 Hb_000251_070 Hb_004934_110--Hb_000251_070 Hb_004934_110--Hb_004657_050 Hb_000331_080 Hb_000331_080 Hb_004934_110--Hb_000331_080 Hb_003607_050 Hb_003607_050 Hb_004934_110--Hb_003607_050 Hb_000840_030 Hb_000840_030 Hb_004934_110--Hb_000840_030 Hb_003050_080 Hb_003050_080 Hb_002686_020--Hb_003050_080 Hb_008878_030 Hb_008878_030 Hb_002686_020--Hb_008878_030 Hb_002686_020--Hb_001540_010 Hb_002686_020--Hb_000331_080 Hb_001821_010 Hb_001821_010 Hb_002686_020--Hb_001821_010 Hb_007416_030 Hb_007416_030 Hb_002686_020--Hb_007416_030 Hb_001540_010--Hb_003050_080 Hb_001540_010--Hb_008878_030 Hb_005993_040 Hb_005993_040 Hb_001540_010--Hb_005993_040 Hb_000970_010 Hb_000970_010 Hb_001540_010--Hb_000970_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.6578 7.79964 11.1671 8.59822 15.3999 17.3366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.7632 40.7524 22.6556 7.1423 8.09135

CAGE analysis