Hb_004931_100

Information

Type -
Description -
Location Contig4931: 95086-97458
Sequence    

Annotation

kegg
ID tcc:TCM_004049
description Actin depolymerizing factor 6 isoform 1
nr
ID XP_007050307.1
description Actin depolymerizing factor 6 isoform 1 [Theobroma cacao]
swissprot
ID Q8SAG3
description Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1
trembl
ID A0A061DNR6
description Actin depolymerizing factor 6 isoform 1 OS=Theobroma cacao GN=TCM_004049 PE=4 SV=1
Gene Ontology
ID GO:0015629
description actin-depolymerizing factor 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45367: 95238-97416 , PASA_asmbl_45368: 95254-96443 , PASA_asmbl_45370: 95474-95738
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004931_100 0.0 - - Actin depolymerizing factor 6 isoform 1 [Theobroma cacao]
2 Hb_005656_100 0.108271384 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002374_400 0.1213177808 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
4 Hb_001005_080 0.124048801 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
5 Hb_002217_230 0.127785514 - - PREDICTED: uncharacterized protein LOC105643583 [Jatropha curcas]
6 Hb_004128_110 0.1347587602 - - glutathione S-transferase L3-like [Jatropha curcas]
7 Hb_000707_020 0.1382046072 - - hypothetical protein B456_002G255500 [Gossypium raimondii]
8 Hb_007441_260 0.1408354254 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
9 Hb_033642_080 0.142968195 - - V-type proton ATPase subunit E [Hevea brasiliensis]
10 Hb_007432_020 0.1433747454 - - hypothetical protein POPTR_0010s13310g [Populus trichocarpa]
11 Hb_005391_030 0.1459093601 - - putative cytidine/deoxycytidylate deaminase family protein [Zea mays]
12 Hb_005137_060 0.1462516858 - - -
13 Hb_005000_180 0.1464018026 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
14 Hb_000896_040 0.1501153571 - - BnaC02g13240D [Brassica napus]
15 Hb_007850_080 0.1507075041 - - PREDICTED: auxilin-like protein 1 isoform X1 [Jatropha curcas]
16 Hb_180074_010 0.1519848595 - - Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis]
17 Hb_003291_020 0.1520511257 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
18 Hb_000252_110 0.1528512619 - - -
19 Hb_001484_010 0.1536802023 - - hypothetical protein POPTR_0005s07440g [Populus trichocarpa]
20 Hb_001481_140 0.1542672724 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]

Gene co-expression network

sample Hb_004931_100 Hb_004931_100 Hb_005656_100 Hb_005656_100 Hb_004931_100--Hb_005656_100 Hb_002374_400 Hb_002374_400 Hb_004931_100--Hb_002374_400 Hb_001005_080 Hb_001005_080 Hb_004931_100--Hb_001005_080 Hb_002217_230 Hb_002217_230 Hb_004931_100--Hb_002217_230 Hb_004128_110 Hb_004128_110 Hb_004931_100--Hb_004128_110 Hb_000707_020 Hb_000707_020 Hb_004931_100--Hb_000707_020 Hb_000673_020 Hb_000673_020 Hb_005656_100--Hb_000673_020 Hb_005656_100--Hb_001005_080 Hb_003880_030 Hb_003880_030 Hb_005656_100--Hb_003880_030 Hb_007850_080 Hb_007850_080 Hb_005656_100--Hb_007850_080 Hb_013405_140 Hb_013405_140 Hb_005656_100--Hb_013405_140 Hb_000175_030 Hb_000175_030 Hb_005656_100--Hb_000175_030 Hb_003185_050 Hb_003185_050 Hb_002374_400--Hb_003185_050 Hb_005000_180 Hb_005000_180 Hb_002374_400--Hb_005000_180 Hb_002138_010 Hb_002138_010 Hb_002374_400--Hb_002138_010 Hb_002374_390 Hb_002374_390 Hb_002374_400--Hb_002374_390 Hb_002374_400--Hb_001005_080 Hb_001016_090 Hb_001016_090 Hb_002374_400--Hb_001016_090 Hb_000417_260 Hb_000417_260 Hb_001005_080--Hb_000417_260 Hb_001481_140 Hb_001481_140 Hb_001005_080--Hb_001481_140 Hb_001519_030 Hb_001519_030 Hb_001005_080--Hb_001519_030 Hb_007192_100 Hb_007192_100 Hb_001005_080--Hb_007192_100 Hb_152910_020 Hb_152910_020 Hb_001005_080--Hb_152910_020 Hb_005463_140 Hb_005463_140 Hb_001005_080--Hb_005463_140 Hb_032208_060 Hb_032208_060 Hb_002217_230--Hb_032208_060 Hb_004672_010 Hb_004672_010 Hb_002217_230--Hb_004672_010 Hb_001638_230 Hb_001638_230 Hb_002217_230--Hb_001638_230 Hb_000896_040 Hb_000896_040 Hb_002217_230--Hb_000896_040 Hb_005285_030 Hb_005285_030 Hb_002217_230--Hb_005285_030 Hb_001054_100 Hb_001054_100 Hb_004128_110--Hb_001054_100 Hb_004128_110--Hb_002217_230 Hb_000318_100 Hb_000318_100 Hb_004128_110--Hb_000318_100 Hb_000590_100 Hb_000590_100 Hb_004128_110--Hb_000590_100 Hb_002849_200 Hb_002849_200 Hb_004128_110--Hb_002849_200 Hb_012490_050 Hb_012490_050 Hb_000707_020--Hb_012490_050 Hb_000834_030 Hb_000834_030 Hb_000707_020--Hb_000834_030 Hb_000302_280 Hb_000302_280 Hb_000707_020--Hb_000302_280 Hb_138585_040 Hb_138585_040 Hb_000707_020--Hb_138585_040 Hb_000707_020--Hb_001005_080 Hb_000049_050 Hb_000049_050 Hb_000707_020--Hb_000049_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
84.5368 54.3875 50.2952 152.357 39.656 40.4184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
360.049 423.378 274.181 323.774 77.0861

CAGE analysis